BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920798
Length=614
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18650.1 | Symbols: PDCB3 | plasmodesmata callose-binding pr... 915 0.0
> AT1G18650.1 | Symbols: PDCB3 | plasmodesmata callose-binding
protein 3 | chr1:6418858-6420557 REVERSE LENGTH=877
Length=877
Score = 915 bits (495), Expect = 0.0
Identities = 562/592 (95%), Gaps = 13/592 (2%)
Strand=Plus/Plus
Query 4 GTTCTGGTACAGCGACCATGGCAGTTGTTGTTCTTGCTG-TGATTTTGTTGGCCATGGCT 62
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct 128 GTTCTGGTACAGCGACCATGGCAGTTTTTGTTCTTG-TGATGATTTTGTTGGCCATGGCT 186
Query 63 GGTCACTCAAGTGGGACATGGTGTGTATGCAAAGAAGGGTTAAGCGAGGCAATGCTGCAG 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GGTCACTCAAGTGGGACATGGTGTGTATGCAAAGAAGGGTTAAGCGAGGCAATGCTGCAG 246
Query 123 AAGACATTGGACTACGCATGTGGTGCTGGAGCTGATTGTGGACCCATTCACCAGAACGGA 182
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 247 AAGACATTGGACTACGCATGTGGTGCAGGAGCTGATTGTGGACCCATTCACCAGACCGGG 306
Query 183 CCTTGCTTTAACCCTAACACCGTCAAGTCTCATTGCTCCTACGCCGTCAACAGCTTCTTT 242
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 307 CCTTGCTTTAACCCTAACACCGTCAAGTCTCACTGCTCCTACGCCGTCAACAGCTTCTTT 366
Query 243 CAGAAGAAAGGTCAGTCTCAGGGCACTTGTGACTTTGCTGGCACAGCCATCGTCTCAGCC 302
||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 367 CAGAAGAAAGGTCAGTCTCTGGGCACTTGTGACTTTGCTGGCACAGCCACCTTCTCAGCC 426
Query 303 TCTGATCCCAGCTACACAACTTGTCCTTTCCCTGCAAGTGCCAGTGGTAGTGGGACAACG 362
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 427 TCTGATCCCAGCTACACTACTTGTCCTTTCCCTGCAAGTGCCAGTGGAAGTGGGACAACG 486
Query 363 ACTCCAGTGACGACAACACCTTCGACAAGAGTCCCTACAACAACTAATACAAGACCCTAC 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 ACTCCAGTGACGACAACACCTTCGACAAGAGTCCCTACAACAACTAATACAAGACCCTAC 546
Query 423 ACAATCACACCATCAACAGGAGGAGGTCTGGGAATACCATCTGGAACAGGAGGTATTAAC 482
||||||||||||||||||||||||||| |||||||||| ||||| |||||||
Sbjct 547 ACAATCACACCATCAACAGGAGGAGGTTTGGGAATACCGTCTGG---------TATTAAC 597
Query 483 CCGGATTACACAGATCCATCCTTTGGATTCAAACTCCAAAACCCAAGATTTGGAGTCATA 542
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 598 CCGGATTACACAGATCCATCCTTTGGATTCAAACTCCAAAGCCCAAGATTTGGATTCATA 657
Query 543 GTCTTCTTTACTCTCTTCTTACC-TTTCTACTTGTTTAGCTAACTAAGTGAT 593
||||| || ||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct 658 GTCTTGTTCACTCTCTTCCTACCCTTT-TACTTGTTTAGCTAACTAAGTGAT 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29587912583
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5