BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920799
Length=2132
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74310.1 | Symbols: ATHSP101, HSP101, HOT1 | heat shock prot... 1061 0.0
AT4G14670.1 | Symbols: CLPB2 | casein lytic proteinase B2 | chr... 870 0.0
> AT1G74310.1 | Symbols: ATHSP101, HSP101, HOT1 | heat shock protein
101 | chr1:27936508-27940190 REVERSE LENGTH=3165
Length=3165
Score = 1061 bits (574), Expect = 0.0
Identities = 1221/1529 (80%), Gaps = 61/1529 (4%)
Strand=Plus/Plus
Query 495 AGGGCTTAAAGAGAAATATGAAGTACACCATGGTGT-CTGTATCCAAGACACAGCTCTTG 553
||| || || ||||| ||||| | ||| |||||||| | | |||||||||| |||||||
Sbjct 1278 AGGACTCAAGGAGAAGTATGAGGGACATCATGGTGTGC-GAATCCAAGACAGAGCTCTTA 1336
Query 554 TTGTTTCTGCTCAGTTGTCTGCTCGTTACATCACTGGTCGAAAATTACCGGATAAGGCTA 613
| | |||||||| |||||||||||||||| |||||||| | ||||||||||| || |
Sbjct 1337 TAAATGCTGCTCAGCTGTCTGCTCGTTACATAACTGGTCGGCATTTACCGGATAAAGCAA 1396
Query 614 TTGATTTGGTTGATGAGGCTTGTGC-ATATGTAAGAGTCCAGCTTGATAGTCAACCTGAA 672
||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||
Sbjct 1397 TTGATTTGGTTGATGAGGCTTGTGCGA-ATGTGAGAGTCCAGCTTGATAGTCAACCTGAA 1455
Query 673 GAAATTGATGACTTTGAAAGAAAGAGAATGCAGCTA-AAGATAGAACTTCATGCCCTCGA 731
|| |||||| || ||||||| ||||| |||||||| || || |||||||| ||| | ||
Sbjct 1456 GAGATTGATAACCTTGAAAGGAAGAGGATGCAGCTGGAA-ATTGAACTTCACGCCTTGGA 1514
Query 732 AAAGGATAAGGACAAAGCCAGTGTAGCTCGTCTTGT-GAAGGTGCAGAAAGAGCTTGATG 790
|| ||| ||||| |||||||| |||||| ||| | || ||||| ||||||||||||||
Sbjct 1515 AAGGGAGAAGGATAAAGCCAGCAAAGCTCGACTTATAGA-GGTGCGGAAAGAGCTTGATG 1573
Query 791 ACTTGAGGGACAAGCTTCAGCCTCTTAC-ATTGAGATACCA-AAATGAGAA-GAAGATAA 847
|| |||| ||||||||||||||||| || || || |||| | ||| ||||| || || ||
Sbjct 1574 ACCTGAGAGACAAGCTTCAGCCTCTCACGAT-GAAATAC-AGAAAGGAGAAAGA-GAGAA 1630
Query 848 TTGATGAGATTCGCAAG-CTTAAACAGAAACGGGAAGAGCTCATGTCTGCTCTAAAGGAG 906
||||||||||||| ||| |||||||||||| | ||||||||||||| | || | |||||
Sbjct 1631 TTGATGAGATTCG-AAGGCTTAAACAGAAAAGAGAAGAGCTCATGTTTTCTTTGCAGGAG 1689
Query 907 GCTGAGAGGCAACATAAG-C-TCCCTAGAGCTGCTGATCTAAGATATGGGGAAATTCAAC 964
|| || | | || ||| | | | | ||||||||||||||||||||||| | |||||||
Sbjct 1690 GCAGA-ACG-AAGATATGACCTTGCAAGAGCTGCTGATCTAAGATATGGCGCAATTCAAG 1747
Query 965 AAGTGGAATCTGGACTAGCAAAACTAGAAGAGAG-TTCTA---AAGAGAACCTAATGCTT 1020
|||||||||||| | | || |||| |||| || |||| ||||||| | |||||
Sbjct 1748 AAGTGGAATCTGCAATTGCCCAACTTGAAG-GAACTTCTTCTGAAGAGAATGTGATGCTC 1806
Query 1021 AC-GAAAACTGTCGGGCCGGATA-ACATTGCTGAGATAGTGAGCCAATGGACTGGGATTC 1078
|| |||||| || ||||| || | ||||||||||| | ||||||| ||||| |||||||
Sbjct 1807 ACAGAAAAC-GTTGGGCCTGA-ACACATTGCTGAGGTTGTGAGCCGTTGGACAGGGATTC 1864
Query 1079 CAGTGACTAAACTTGACCAGAACGACAAGGAGAAGCTAAATTC-TCTTGCTGATAGGTTA 1137
||||||| | ||||| ||| || || ||||||| | | | || |||||||||||||||
Sbjct 1865 CAGTGACGAGACTTGGCCAAAATGAGAAGGAGAGGTTGA-TTGGTCTTGCTGATAGGTTG 1923
Query 1138 CACCAGAGGGTTGTTGGACAAGAC-CAAGCGGTGGACGCTGTGGCTGATGCAATTTTAAG 1196
|| || ||||||| ||||| || |||||||| | || || |||| |||||| ||||
Sbjct 1924 CATAAGCGGGTTGTGGGACA-GAATCAAGCGGTAAATGCAGTTTCTGAGGCAATTCTAAG 1982
Query 1197 GTCGAGGGCTGGTCTTGGAAGTCCACAACAACCCACTGGTTCCTTCCTCTTCCTCGGTCC 1256
||| ||||| || |||||||| |||||||| || ||||| || ||| | ||||| || ||
Sbjct 1983 GTCAAGGGCAGGACTTGGAAGGCCACAACAGCCAACTGGATCATTCTTATTCCTTGGACC 2042
Query 1257 AACTGGTGTTGGCAAAACTGAGCTAGCTAAGGCTCTCGCTGAGCAACTCTTTGACGATGA 1316
|||||||||||||||||||||||| || |||||||| |||||||| || ||||| |||||
Sbjct 2043 AACTGGTGTTGGCAAAACTGAGCTCGCCAAGGCTCTTGCTGAGCAGCTGTTTGATGATGA 2102
Query 1317 AAACCTTTTGGTTAGGCTTGATATGTCAGAGTATATGGAAAAATACTC-GAT-TACTCGA 1374
|||||| || ||| || |||||||||| || ||||||||| || |||| | | | ||||
Sbjct 2103 AAACCTCTTAGTTCGGATTGATATGTCGGAATATATGGAACAACACTCTG-TCT-CTCGC 2160
Query 1375 CTCATTGGAGCATCACCTGGGTACATTGGTTATGAGGAAGGTGGACAATTAACTGAAGCT 1434
|||||||| ||| |||| ||||| ||||| | ||||||||||||||| ||||||| |||
Sbjct 2161 CTCATTGGGGCACCACCAGGGTATGTTGGTCACGAGGAAGGTGGACAACTAACTGAGGCT 2220
Query 1435 GTGAGGAACCGACCTTATTGCGTTGTACTATTTGATGAAGTTGAAAAGGCCCATGTTTCT 1494
||||||| ||||||||||| || |||| ||||||||||| || ||||| |||||| ||
Sbjct 2221 GTGAGGAGGCGACCTTATTGTGTCATACTCTTTGATGAAGTGGAGAAGGCTCATGTTGCT 2280
Query 1495 ATATTCAACA-TACTACTTCAAGTGCTAGACGAAGGAAGATTAACAGACTCGCAAGGGAG 1553
| ||||||| | || || ||||| | || || || |||| |||||| |||||| ||
Sbjct 2281 GTCTTCAACACT-CTGCTCCAAGTTTTGGATGATGGTCGATTGACAGACGGGCAAGGCAG 2339
Query 1554 GACAGTCGATTTCAAAAACTCAATGATAATAATGAC-TGCAAACATTGGTGCTGACCACC 1612
|||||||||||||| ||||| ||||||| ||||| | ||||| |||||||||| ||||
Sbjct 2340 GACAGTCGATTTCAGGAACTCGGTGATAATCATGACAT-CAAACCTTGGTGCTGAACACC 2398
Query 1613 TTATCT-CAGGCCTTACAGGTGAA-GTGACAATGCAAGTGGCTCAAGACCGCGTGATGAA 1670
| | | |||| || || || ||| || |||||| ||||||| | ||| | ||||||
Sbjct 2399 TCCT-TGCAGGGCTAACTGG-GAAAGTAACAATGGAAGTGGCCCGGGACTGTGTGATGCG 2456
Query 1671 AGCTGTGAA-AAAGCATTTCAGGCCAGAGTTACTA-AACAGA-TTGGATGAGATAGTGGT 1727
| |||| ||| || ||||| |||||| | || ||||| ||| | ||||| |||||
Sbjct 2457 GGAGGTGAGGAAA-CACTTCAGACCAGAGCT-CTTGAACAGGCTTG-ACGAGATTGTGGT 2513
Query 1728 GTTTGATCCACTGTCGCATGAGAATTTGAGAAAAGTGGCTCAGCTCCAAATGAA-GAATG 1786
||| || || || || ||||| | ||||| ||||| |||| ||| |||||||| || |
Sbjct 2514 GTTCGACCCCCTTTCACATGACCAGTTGAGGAAAGTAGCTCGGCTTCAAATGAAAGAC-G 2572
Query 1787 TTGTTATCAGGCTAGCTGAGAA-AGGTA-TAGCTTTGG-ATGTCACAAATGATGCATTGG 1843
||| | || |||| ||||| || ||| | | ||||||| | ||||| ||| ||| ||||
Sbjct 2573 TTGCTGTCCGGCTTGCTGA-AAGAGG-AGTTGCTTTGGCA-GTCACTGATGCTGCTTTGG 2629
Query 1844 ACTATATTTTAGAAGCGAGTTACAACCCGGTGTACGGTGCTAGGCCCATTAAG-AGATGG 1902
||||||| || | || |||||| |||||||||| ||||||||||| || ||| ||||||
Sbjct 2630 ACTATATCTTGGCAGAGAGTTATGACCCGGTGTATGGTGCTAGGCCTAT-AAGGAGATGG 2688
Query 1903 CTGGAGAAGAATGTTGTCACAGTCCTGTCGAAGATGATTGTGCGAGAAGAAATCGCTGAG 1962
|||||||||| || || |||| ||||| |||||| ||||||| || ||||||| |||
Sbjct 2689 ATGGAGAAGAAGGTGGTGACAGAACTGTCAAAGATGGTTGTGCGTGAGGAAATCGATGAA 2748
Query 1963 AACTCGATTGTGTACATAGATGTAAGCGC 1991
||||| | ||| |||||||||| | ||||
Sbjct 2749 AACTCCACTGTTTACATAGATGCAGGCGC 2777
> AT4G14670.1 | Symbols: CLPB2 | casein lytic proteinase B2 | chr4:8410054-8412557
FORWARD LENGTH=1872
Length=1872
Score = 870 bits (471), Expect = 0.0
Identities = 788/937 (84%), Gaps = 37/937 (4%)
Strand=Plus/Plus
Query 495 AGGGCTTAAAGAGAAATATGAAGTACACCATGGTG-TCTGTATCCAAGACACAGCTCTTG 553
|||||||||||| |||||||||| ||| ||||||| || |||||||||| | |||||| |
Sbjct 951 AGGGCTTAAAGAAAAATATGAAGGACATCATGGTGTTC-GTATCCAAGATAGAGCTCTAG 1009
Query 554 TTGTTTCTGCTCAGTTGTCTGCTCGTTACATCACTGGTCGAAAATTACCGGATAAGGCTA 613
|| |||||||||| ||||||| |||||||||||||||||| |||||||||||||| |
Sbjct 1010 TTCTTTCTGCTCAATTGTCTGAACGTTACATCACTGGTCGACGTTTACCGGATAAGGCAA 1069
Query 614 TTGATTTGGTTGATGAGGCTTGTGCATATGT-AAGAGTCCAGCTTGATAGTCAACCTGAA 672
||||||| ||||||||| |||||||| |||| || || ||||||||||| |||||| |||
Sbjct 1070 TTGATTTAGTTGATGAGTCTTGTGCACATGTCAA-AGCCCAGCTTGATATTCAACCAGAA 1128
Query 673 GAAATTGATGA-CTTTGAAAGAAAGAG-AATGCAGCTAAAGATAGA-ACTTCATGCCCTC 729
||||||||| | | |||||||||| || |||||| ||| ||||||| | ||||||| |||
Sbjct 1129 GAAATTGAT-AGCCTTGAAAGAAA-AGTAATGCAACTAGAGATAGAGA-TTCATGCTCTC 1185
Query 730 GAAAAGGATAA-G--GACAAAGCCAGTGTAGCTCGTC-TTGTGAAGGTGCA-GAAAGAGC 784
|||||||| || | |||||||| || | |||||||| || | ||||| | ||||||||
Sbjct 1186 GAAAAGGAGAAGGACGACAAAGCTAGCGAAGCTCGTCTTTCCG-AGGTG-AGGAAAGAGC 1243
Query 785 TTGATGACTTGAGGGACAAGCTTCAGCCTCTTACATTGAGATACCAAAATGAGAAGAAGA 844
||||||||||||||||||||||| ||||||||||| | | |||| |||| ||||| ||||
Sbjct 1244 TTGATGACTTGAGGGACAAGCTTGAGCCTCTTACAATAAAATACAAAAAGGAGAAAAAGA 1303
Query 845 TAATTGATGAGATTCGCAAGCTTAAACAGAAACGGGAAGAGCTCATG-TCTGCTCTA-AA 902
| ||| |||| | ||| | |||||||||||| || || || |||||| | ||||||| ||
Sbjct 1304 TCATTAATGAAACTCGGAGGCTTAAACAGAATCGAGACGATCTCATGAT-TGCTCTACAA 1362
Query 903 GGAGGCTGAGAGGCAACATAA-GCTCCCTAGAGCTGCTGATCTAAGATATGGGGAAATTC 961
| |||||||||| |||||| | | ||| || |||||||| ||||| |||||| | |||||
Sbjct 1363 G-AGGCTGAGAGACAACATGACGTTCC-TAAAGCTGCTGTTCTAAAATATGGTGCAATTC 1420
Query 962 AACAAGTGGAATCTG-GACTAGCAAAACTAGAAGAGAGTTCTAAAGAGAACCTAATGCTT 1020
| |||| ||||||| || |||| ||||||||| ||||| ||||||| ||| | ||||||
Sbjct 1421 AGGAAGTAGAATCTGCGA-TAGCGAAACTAGAAAAGAGTGCTAAAGATAACGTGATGCTT 1479
Query 1021 AC-GAAAACTGTCGGGCCGGATAACATTGCTGAGATAGTGAGCCAATGGACTGGGATTCC 1079
|| |||| |||| ||||| || || ||||||||| ||||||||| |||||||||||| ||
Sbjct 1480 ACAGAAA-CTGTTGGGCCAGAGAATATTGCTGAGGTAGTGAGCCGATGGACTGGGATACC 1538
Query 1080 AGTGACTAAACTTGACCAGAACGACAAGGAGAAGCTAAATTCTCTTGCTGATAGGTTACA 1139
|||||||| ||||||||||||||| ||| ||| ||||| |||||||||||||| ||| ||
Sbjct 1539 AGTGACTAGACTTGACCAGAACGAGAAGAAGAGGCTAATTTCTCTTGCTGATAAGTTGCA 1598
Query 1140 CCAGAGGGTTGTTGGACAAGACCAAGCGGTGGACGCTGTGGCTGATGCAATTTTAAGGTC 1199
| |||| ||||||||||||||| |||| ||| | |||||||||| |||||| |||||||
Sbjct 1599 CGAGAGAGTTGTTGGACAAGACGAAGCTGTGAAAGCTGTGGCTGCTGCAATACTAAGGTC 1658
Query 1200 GAGGGCTGGTCTTGGAAGTCCACAACAACCCACTGGTTCCTTCCTCTTCCTCGGTCCAAC 1259
||||| ||| || ||||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct 1659 GAGGGTTGGACTAGGAAGGCCACAACAACCGTCTGGTTCCTTTCTCTTCCTCGGTCCAAC 1718
Query 1260 TGGTGTTGGCAAAACTGAGCTAGCTAAGGCTCTCGCTGAGCAACTCTTTGAC-GATGAAA 1318
||||||||| ||||| ||||| ||||||||||| |||||||||||||||||| | |||||
Sbjct 1719 TGGTGTTGGTAAAACCGAGCTGGCTAAGGCTCTGGCTGAGCAACTCTTTGACAG-TGAAA 1777
Query 1319 ACCTTTTGGTTAGGCTTGATATGTCAGAGTATA-TGGAAAAATACTC-GATTACTCGACT 1376
|||| | ||||||||||||||||| ||||||| || | |||| ||| | ||| | |||
Sbjct 1778 ACCTACTCGTTAGGCTTGATATGTCGGAGTATAATG-ACAAATTCTCTG-TTAATAAACT 1835
Query 1377 CATTGGAGCATCACCTGG----GTACATTGGTTATGA 1409
|| || ||| ||||||| |||||||||| ||||
Sbjct 1836 TATAGGGGCACCACCTGGATACGTACATTGGTCATGA 1872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105722347770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5