BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920808
Length=664
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18720.1 | Symbols: | Protein of unknown function (DUF962) ... 1048 0.0
> AT1G18720.1 | Symbols: | Protein of unknown function (DUF962)
| chr1:6457821-6459751 REVERSE LENGTH=913
Length=913
Score = 1048 bits (567), Expect = 0.0
Identities = 636/669 (95%), Gaps = 6/669 (1%)
Strand=Plus/Plus
Query 1 CTCTTCCTCAA--AATTCATTCA-CCATGAGTCGCATGATGGGATTGTTCGATCTCGAGA 57
||||||||||| |||| || | ||||||||||||| ||||||||||||||||||||||
Sbjct 69 CTCTTCCTCAACGAATT-TTTTATCCATGAGTCGCATAATGGGATTGTTCGATCTCGAGA 127
Query 58 AACACTTCGCCTTCTACGGTGCTTACCACAGCAATCCGATCAACATTCTAATCCACATCA 117
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 128 AACACTTCGCCTTCTACGGTGCTTACCATAGCAATCCGATCAACATTCTAATCCACATCA 187
Query 118 TCTTCGTTTGGCCAATCGTCTTCTCAGCTTTACTTCTCCTCCACTCATCGACCCCAATTT 177
||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||
Sbjct 188 TCTTCGTTTGGCCAATCTTCTTCTCAGTTTTACTTCTCCTCCACTCGTCGACCCCAATTT 247
Query 178 TCGATCCTTCTCAATTAGGGTTTTCTCAATCGTTGACCCTCGACGGCGTTCTGCGATTTA 237
|||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 248 TCGACCCCTCTCAATTAGGGTTTTCTCAATCGTTGACCCTCGACGGCGTTTTGCGATTTA 307
Query 238 ACGTTGGGTTTATATTCACCTTGATTTATGCTCTGTTCTACATTGGTTTGGATAAAAAAT 297
||||||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||
Sbjct 308 ACGTTGGGTTTATATTCGCCTTGATTTATGCTCTGTTCTATATCGGTTTGGATAAGAAAT 367
Query 298 CTGGATTTGTAGCTGCTCTTATGTGTTTCTCTTGCTGGGTTGGTTCCAGTTTTCTCGCTG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 368 CTGGATTTGTAGCTGCTCTTATGTGTTTCTCTTGCTGGGTTGGTTCCAGTTTTCTTGCTG 427
Query 358 CTCGATTAGGATCTTCTCTTACCTTTAAGGTTGGGTTAGCATCTCAGCTGTTATGTTGGA 417
|||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 428 TTCGACTAGGATCTTCTCTTGCCTTAAAGGTTGGGTTAGCATCTCAGCTGTTATGTTGGA 487
Query 418 CCGGGCAGTTCGTTGGCCATGGAGTGTTCGAGAAACGAGCACCTGCGCTATTAGACAATT 477
||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 488 CCGGGCAGTTCGTTGGCCATGGAGTATTCGAGAAACGGGCACCTGCGCTGTTAGACAATT 547
Query 478 TAGTCCAAGCTTTTCTCATGGCTCCTTTCTTCGTGTTGCTCGAGGTTCTTCAGTCAGTTT 537
|| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 548 TACTCCAAGCTTTTCTCATGGCTCCTTTCTTCGTGTTGCTCGAGGTTCTTCAATCGGTTT 607
Query 538 TCGGGTATGAACCATATCCCGGTTTTCAAGCGCGTGTGAATGCCAAGGTAGAAAGTGACA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 TCGGGTATGAACCATATCCCGGTTTTCAAGCGCGTGTGAATGCCAAGGTAGAAAGTGACA 667
Query 598 TCAAGGAATATAGGGCAAATAAGCAGAAGAAGAATAAGATCACATAAGTTTGGATTATAT 657
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 668 TCAAGGAATATAGGGCAAAGAAGCAGAAGAAGAATAAGATCACATAAGCTTGGATTATAT 727
Query 658 A-A-CTGAA 664
| | |||||
Sbjct 728 ATAACTGAA 736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099619933
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5