BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920818
Length=1307
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18780.1 | Symbols: | RING/U-box superfamily protein | chr1... 470 2e-131
> AT1G18780.1 | Symbols: | RING/U-box superfamily protein | chr1:6476258-6477235
REVERSE LENGTH=978
Length=978
Score = 470 bits (254), Expect = 2e-131
Identities = 376/436 (86%), Gaps = 4/436 (1%)
Strand=Plus/Plus
Query 852 GGATGATTACGATGCTAACTTTTCC-CATGAAGAAGCAACTCCATCTCAGCTTGGAGAAT 910
|||||| ||| ||| | || ||||| | ||||||||| || |||||||||||||||||
Sbjct 543 GGATGACTACAATGATTAC-TTTCCTTACGAAGAAGCATCTTCATCTCAGCTTGGAGAAG 601
Query 911 TTGTTCCATTCTACGGGCTGTCACGCTTATTGGTTCATCACGATGCTAGCTTTGACTTTG 970
|||||| |||| ||||| || ||| |||| || | | ||| |||||||||||| ||| |
Sbjct 602 TTGTTCTATTCCACGGGTTGCCACACTTAAGGGATGAGCACCATGCTAGCTTTGGCTTCG 661
Query 971 ATCATCAAACTGAGGAAGCATTTCGTTCTCGGATTGCAGAAGTTTCTCGAGTTTCGTTCA 1030
||||||||| ||| ||||| | || ||||| ||||| |||||||| || |||||||||||
Sbjct 662 ATCATCAAATTGAAGAAGCGTCTCATTCTCAGATTGAAGAAGTTTTTCAAGTTTCGTTCA 721
Query 1031 ATGAGACCAATACTGTCAGGTTAAAACCTGCGAGCAAGTTCGTTGTCGGATCTTTGAATA 1090
|||||||||| ||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 722 ATGAGACCAACACTGTCAGGTTAAAACCTGCGAGCAAGCTCACTGTCGGGGCTTTGAATA 781
Query 1091 GGAAAATATACAAGAAGGCTAGAGATGTCGTCGT-TGAGAATGACATGTGAACTATTTGT 1149
|||||| ||||||||| ||||| | ||| || | |||||||||| |||| |||||||||
Sbjct 782 GGAAAACATACAAGAAAGCTAGTGGTGTTGT-ATGTGAGAATGACGTGTGCACTATTTGT 840
Query 1150 TTGGAAGAGTTTGACGATGGAAGGAGTATTGTGACTTTACCGTGTGGACACGAGTTTGAC 1209
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 841 TTGGAAGAGTTTGACGATGGAAGAAGTATTGTGACTTTACCGTGTGGGCACGAGTTTGAC 900
Query 1210 GAGGAGTGTATTGAAGAGTGGTTTGTGAGAAATCATATATGTCCATTGTGTCGTTTTGAG 1269
||||||||| || ||||||||||||||||| |||| ||||||||||||||||| | |||
Sbjct 901 GAGGAGTGTGTTTTAGAGTGGTTTGTGAGAAGTCATGTATGTCCATTGTGTCGTCTCGAG 960
Query 1270 TTGCCACATGAAAGAT 1285
|||||| ||||||||
Sbjct 961 TTGCCATGTGAAAGAT 976
Score = 427 bits (231), Expect = 1e-118
Identities = 354/412 (86%), Gaps = 13/412 (3%)
Strand=Plus/Plus
Query 1 TTCTTGATCGTTCTCGCCATTATGACTTCGTCCTTCACACACGAAATCAAGCACACTCCA 60
|||||||||||||||||||| |||| ||| |||||| |||| ||||| |||||| |||
Sbjct 61 TTCTTGATCGTTCTCGCCATCATGATTTCATCCTTCGCACATGAAATTGAGCACAATCCT 120
Query 61 ATACCCGAAGATGTTGGCAAAATCAAAATCAGTGTTGATACAACCAAAATATATCAAAG- 119
|||| ||||||||||||| |||||| |||||||||| ||| |||||||||||||||||
Sbjct 121 GTACCTGAAGATGTTGGCATAATCAATATCAGTGTTGCTACGACCAAAATATATCAAAGT 180
Query 120 -T-ATCAGCAATTGGGACCTCTATCAAGAAC-AA-A-AAGAATTCTCGTGTATCCCGGTT 174
| ||||| |||| || |||||| | |||| || | ||||||||| ||||||||||||
Sbjct 181 ATCATCAGTAATTATGATCTCTATGATGAACTAACATCAGAATTCTCTTGTATCCCGGTT 240
Query 175 TCTTTACGTGAATGTATTGAC-GTAGAAG-TTACCGAATTCTTGACGCGATCAGGAGAAA 232
|||||||| || ||| ||| | |||| || |||| |||||||||||| |||||||| |||
Sbjct 241 TCTTTACGCGACTGTGTTG-CTGTAG-AGCTTACTGAATTCTTGACGGGATCAGGAAAAA 298
Query 233 TCACTCCTATAGATGCTTACAATGTGTTACTAGACTTGTTTCGATTTATCGATGAAGTAA 292
||||||| || ||||||||| ||||||||||||| ||||||||||| |||||||| |||
Sbjct 299 TCACTCCCATCGATGCTTACCATGTGTTACTAGAGTTGTTTCGATTCGTCGATGAAATAA 358
Query 293 CTTCTTCTGATGAATATACTCCAGGTTGTGCTTTAAGAGTGTTGATGACTCTTACTATCG 352
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 CTTCCTCTGATGATTATACTCCAGGTTGTGCTTTAAGAGTGTTGATGACTCTTACAATCG 418
Query 353 GTATTCCTTATGAAAAAATTGAAGA---CGTTCTAGGTTCAGAGGATGAGCA 401
||||||| |||| | |||||||| ||||||||||| ||||||||||||
Sbjct 419 CTATTCCTCCTGAACATATTGAAGAAGACGTTCTAGGTTTAGAGGATGAGCA 470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64306898145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5