BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg920819 Length=1075 Score E Sequences producing significant alignments: (Bits) Value AT1G18760.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)... 327 1e-88 AT3G13228.1 | Symbols: | RING/U-box superfamily protein | chr3... 309 4e-83 AT1G18770.1 | Symbols: | RING/U-box superfamily protein | chr1... 243 4e-63 AT2G29840.1 | Symbols: | RING/U-box superfamily protein | chr2... 189 5e-47 > AT1G18760.1 | Symbols: | Zinc finger, C3HC4 type (RING finger) family protein | chr1:6471150-6471824 REVERSE LENGTH=675 Length=675 Score = 327 bits (177), Expect = 1e-88 Identities = 273/319 (86%), Gaps = 8/319 (3%) Strand=Plus/Plus Query 741 ATTGAAGAAGAGG-TTCAAGTTGAAGAAGCA-G-TCCAAATTGAAGAAGCGGTACAAATC 797 ||||||||||||| || || |||||||| | | | ||||||||||||||||| | | | Sbjct 361 ATTGAAGAAGAGGATTTGAG-TGAAGAAG-AGGAT-CAAATTGAAGAAGCGGTTCGAGCC 417 Query 798 TCGTTTGACGAGACCACTAACATCTGTTTGAGACCCGCAAGCGAGGTCGTGGTCAAGTCC 857 || || || ||||||| ||| ||| ||||||||||||||| | || |||||||||| || Sbjct 418 TCCTTGGAGGAGACCAATAATATCAGTTTGAGACCCGCAAACAAGCTCGTGGTCAATTCT 477 Query 858 TTAACCAGGAAAATATACGAGAAGATTAGCT-GTACTGGTCAAAAATGCACAATTTGTTT 916 ||| |||||||||||||| |||||| | || || || | ||| |||||||||||||| Sbjct 478 TTAGCCAGGAAAATATACAAGAAGACCA-CTAGTTCTACTGAAAGGTGCACAATTTGTTT 536 Query 917 GGAGGAGTTTAACGATGGAAGAAGAGTTGTGACTTTACCTTGTGGACATGACTTTGACGA 976 ||| |||||||||||||||| || |||| ||||||||||||| |||||||| |||||||| Sbjct 537 GGAAGAGTTTAACGATGGAACAAAAGTTATGACTTTACCTTGCGGACATGAATTTGACGA 596 Query 977 TGAGTGTGTCCTAAAGTGGTTTGAGACCAATCACGATTGTCCTCTGTGTCGTTTCAAGTT 1036 |||||||||||||| |||||||||||| ||||| || ||||| ||||||||||||||||| Sbjct 597 TGAGTGTGTCCTAACGTGGTTTGAGACTAATCATGACTGTCCACTGTGTCGTTTCAAGTT 656 Query 1037 GCCATGTGAAGATCAATGA 1055 ||||||||||||||||||| Sbjct 657 GCCATGTGAAGATCAATGA 675 > AT3G13228.1 | Symbols: | RING/U-box superfamily protein | chr3:4266964-4268251 FORWARD LENGTH=1288 Length=1288 Score = 309 bits (167), Expect = 4e-83 Identities = 238/272 (88%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 780 GAAGAAGCGGTACAAATCTCGTTTGACGAGACCACTAACATCTGTTTGAGACCCGCAAGC 839 |||||||| || ||| |||||||||||||||||||||| |||||||| ||||||||||| Sbjct 811 GAAGAAGCAGTTCAAGTCTCGTTTGACGAGACCACTAATTTCTGTTTGGGACCCGCAAGC 870 Query 840 GAGGTCGTGGTCAAGTCCTTAACCAGGAAAATATACGAGAAGATTAGCTGTACTGGTC-A 898 | ||||||||||||||||||||||||||||||| || ||||||| | ||| || | | Sbjct 871 AAACTCGTGGTCAAGTCCTTAACCAGGAAAATATATGACAAGATTAATTATACAGG-CGA 929 Query 899 AAAATGCACAATTTGTTTGGAGGAGTTTAACGATGGAAGAAGAGTTGTGACTTTACCTTG 958 || |||||||||||||||||| |||||||||| |||| ||| | ||||| |||||||||| Sbjct 930 AAGATGCACAATTTGTTTGGAAGAGTTTAACGCTGGAGGAATACTTGTGGCTTTACCTTG 989 Query 959 TGGACATGACTTTGACGATGAGTGTGTCC-TAAAGTGGTTTGAGACCAATCACGATTGTC 1017 |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct 990 TGGACATGACTTTGACGATGAGTGTG-CCGTAAAGTGGTTTGAGACCAATCACTTTTGTC 1048 Query 1018 C-TCTGTGTCGTTTCAAGTTGCCATGTGAAGA 1048 | | ||||||||| | |||||||| | ||||| Sbjct 1049 CAT-TGTGTCGTTACGAGTTGCCACGCGAAGA 1079 > AT1G18770.1 | Symbols: | RING/U-box superfamily protein | chr1:6473370-6474048 REVERSE LENGTH=321 Length=321 Score = 243 bits (131), Expect = 4e-63 Identities = 188/215 (87%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 831 CCCGCAAGCGAGGTCGTGGTCAAGTCCTTAACCAGGAAAATATAC--GA-GAAGATTAGC 887 ||||||||| || ||||||||||||| ||| ||||||| |||||| || || | ||| Sbjct 100 CCCGCAAGCAAGCTCGTGGTCAAGTCTTTAGCCAGGAAGATATACAAGATGACCACTAGT 159 Query 888 TGTACTGGTCAAAAATGCACAATTTGTTTGGAGGAGTTTAACGATGGAAGAAGAGTTGTG 947 | ||||||| ||| |||| |||||||||||| ||||||| || |||||||||||||| Sbjct 160 TCTACTGGTGAAATGTGCATAATTTGTTTGGAAGAGTTTAGTGAAGGAAGAAGAGTTGTT 219 Query 948 ACTTTACCTTGTGGACATGACTTTGACGATGAGTGTGTCCTAAAGTGGTTTGAGACCAAT 1007 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 220 ACTTTACCTTGTGGACATGACTTTGACGATGAGTGTGTCCTAAAGTGGTTTGAGACCAAT 279 Query 1008 CAC-GATTGTCCTCTGTGTCGTTTCAAGTTGCCAT 1041 ||| | ||| || || ||||||||||||||||||| Sbjct 280 CACAG-TTGCCCCCTCTGTCGTTTCAAGTTGCCAT 313 > AT2G29840.1 | Symbols: | RING/U-box superfamily protein | chr2:12732387-12733983 REVERSE LENGTH=882 Length=882 Score = 189 bits (102), Expect = 5e-47 Identities = 133/148 (90%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 909 ATTTGTTTGGAGGAGTTTAACGATGGAAGAAG-AGTTGTGACTTTACCTTGTGGACATGA 967 |||||| | || |||||| |||| |||||||| | ||||| || |||| |||||||| || Sbjct 736 ATTTGTCTAGAAGAGTTTGACGACGGAAGAAGCA-TTGTGGCTCTACCATGTGGACACGA 794 Query 968 CTTTGACGATGAGTGTGTCCTAAAGTGGTTTGAGACCAATCACGATTGTCCTCTGTGTCG 1027 |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| Sbjct 795 GTTTGACGATGAGTGTGCCCTGAAGTGGTTTGAGACCAATCACGATTGTCCTCTATGTCG 854 Query 1028 TTTCAAGTTGCCATGTGAAGATCAATGA 1055 |||||||||||||||||||||||||||| Sbjct 855 TTTCAAGTTGCCATGTGAAGATCAATGA 882 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52660371705 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5