BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920819
Length=1075
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18760.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)... 327 1e-88
AT3G13228.1 | Symbols: | RING/U-box superfamily protein | chr3... 309 4e-83
AT1G18770.1 | Symbols: | RING/U-box superfamily protein | chr1... 243 4e-63
AT2G29840.1 | Symbols: | RING/U-box superfamily protein | chr2... 189 5e-47
> AT1G18760.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)
family protein | chr1:6471150-6471824 REVERSE LENGTH=675
Length=675
Score = 327 bits (177), Expect = 1e-88
Identities = 273/319 (86%), Gaps = 8/319 (3%)
Strand=Plus/Plus
Query 741 ATTGAAGAAGAGG-TTCAAGTTGAAGAAGCA-G-TCCAAATTGAAGAAGCGGTACAAATC 797
||||||||||||| || || |||||||| | | | ||||||||||||||||| | | |
Sbjct 361 ATTGAAGAAGAGGATTTGAG-TGAAGAAG-AGGAT-CAAATTGAAGAAGCGGTTCGAGCC 417
Query 798 TCGTTTGACGAGACCACTAACATCTGTTTGAGACCCGCAAGCGAGGTCGTGGTCAAGTCC 857
|| || || ||||||| ||| ||| ||||||||||||||| | || |||||||||| ||
Sbjct 418 TCCTTGGAGGAGACCAATAATATCAGTTTGAGACCCGCAAACAAGCTCGTGGTCAATTCT 477
Query 858 TTAACCAGGAAAATATACGAGAAGATTAGCT-GTACTGGTCAAAAATGCACAATTTGTTT 916
||| |||||||||||||| |||||| | || || || | ||| ||||||||||||||
Sbjct 478 TTAGCCAGGAAAATATACAAGAAGACCA-CTAGTTCTACTGAAAGGTGCACAATTTGTTT 536
Query 917 GGAGGAGTTTAACGATGGAAGAAGAGTTGTGACTTTACCTTGTGGACATGACTTTGACGA 976
||| |||||||||||||||| || |||| ||||||||||||| |||||||| ||||||||
Sbjct 537 GGAAGAGTTTAACGATGGAACAAAAGTTATGACTTTACCTTGCGGACATGAATTTGACGA 596
Query 977 TGAGTGTGTCCTAAAGTGGTTTGAGACCAATCACGATTGTCCTCTGTGTCGTTTCAAGTT 1036
|||||||||||||| |||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct 597 TGAGTGTGTCCTAACGTGGTTTGAGACTAATCATGACTGTCCACTGTGTCGTTTCAAGTT 656
Query 1037 GCCATGTGAAGATCAATGA 1055
|||||||||||||||||||
Sbjct 657 GCCATGTGAAGATCAATGA 675
> AT3G13228.1 | Symbols: | RING/U-box superfamily protein | chr3:4266964-4268251
FORWARD LENGTH=1288
Length=1288
Score = 309 bits (167), Expect = 4e-83
Identities = 238/272 (88%), Gaps = 6/272 (2%)
Strand=Plus/Plus
Query 780 GAAGAAGCGGTACAAATCTCGTTTGACGAGACCACTAACATCTGTTTGAGACCCGCAAGC 839
|||||||| || ||| |||||||||||||||||||||| |||||||| |||||||||||
Sbjct 811 GAAGAAGCAGTTCAAGTCTCGTTTGACGAGACCACTAATTTCTGTTTGGGACCCGCAAGC 870
Query 840 GAGGTCGTGGTCAAGTCCTTAACCAGGAAAATATACGAGAAGATTAGCTGTACTGGTC-A 898
| ||||||||||||||||||||||||||||||| || ||||||| | ||| || | |
Sbjct 871 AAACTCGTGGTCAAGTCCTTAACCAGGAAAATATATGACAAGATTAATTATACAGG-CGA 929
Query 899 AAAATGCACAATTTGTTTGGAGGAGTTTAACGATGGAAGAAGAGTTGTGACTTTACCTTG 958
|| |||||||||||||||||| |||||||||| |||| ||| | ||||| ||||||||||
Sbjct 930 AAGATGCACAATTTGTTTGGAAGAGTTTAACGCTGGAGGAATACTTGTGGCTTTACCTTG 989
Query 959 TGGACATGACTTTGACGATGAGTGTGTCC-TAAAGTGGTTTGAGACCAATCACGATTGTC 1017
|||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 990 TGGACATGACTTTGACGATGAGTGTG-CCGTAAAGTGGTTTGAGACCAATCACTTTTGTC 1048
Query 1018 C-TCTGTGTCGTTTCAAGTTGCCATGTGAAGA 1048
| | ||||||||| | |||||||| | |||||
Sbjct 1049 CAT-TGTGTCGTTACGAGTTGCCACGCGAAGA 1079
> AT1G18770.1 | Symbols: | RING/U-box superfamily protein | chr1:6473370-6474048
REVERSE LENGTH=321
Length=321
Score = 243 bits (131), Expect = 4e-63
Identities = 188/215 (87%), Gaps = 5/215 (2%)
Strand=Plus/Plus
Query 831 CCCGCAAGCGAGGTCGTGGTCAAGTCCTTAACCAGGAAAATATAC--GA-GAAGATTAGC 887
||||||||| || ||||||||||||| ||| ||||||| |||||| || || | |||
Sbjct 100 CCCGCAAGCAAGCTCGTGGTCAAGTCTTTAGCCAGGAAGATATACAAGATGACCACTAGT 159
Query 888 TGTACTGGTCAAAAATGCACAATTTGTTTGGAGGAGTTTAACGATGGAAGAAGAGTTGTG 947
| ||||||| ||| |||| |||||||||||| ||||||| || ||||||||||||||
Sbjct 160 TCTACTGGTGAAATGTGCATAATTTGTTTGGAAGAGTTTAGTGAAGGAAGAAGAGTTGTT 219
Query 948 ACTTTACCTTGTGGACATGACTTTGACGATGAGTGTGTCCTAAAGTGGTTTGAGACCAAT 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 ACTTTACCTTGTGGACATGACTTTGACGATGAGTGTGTCCTAAAGTGGTTTGAGACCAAT 279
Query 1008 CAC-GATTGTCCTCTGTGTCGTTTCAAGTTGCCAT 1041
||| | ||| || || |||||||||||||||||||
Sbjct 280 CACAG-TTGCCCCCTCTGTCGTTTCAAGTTGCCAT 313
> AT2G29840.1 | Symbols: | RING/U-box superfamily protein | chr2:12732387-12733983
REVERSE LENGTH=882
Length=882
Score = 189 bits (102), Expect = 5e-47
Identities = 133/148 (90%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 909 ATTTGTTTGGAGGAGTTTAACGATGGAAGAAG-AGTTGTGACTTTACCTTGTGGACATGA 967
|||||| | || |||||| |||| |||||||| | ||||| || |||| |||||||| ||
Sbjct 736 ATTTGTCTAGAAGAGTTTGACGACGGAAGAAGCA-TTGTGGCTCTACCATGTGGACACGA 794
Query 968 CTTTGACGATGAGTGTGTCCTAAAGTGGTTTGAGACCAATCACGATTGTCCTCTGTGTCG 1027
|||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||
Sbjct 795 GTTTGACGATGAGTGTGCCCTGAAGTGGTTTGAGACCAATCACGATTGTCCTCTATGTCG 854
Query 1028 TTTCAAGTTGCCATGTGAAGATCAATGA 1055
||||||||||||||||||||||||||||
Sbjct 855 TTTCAAGTTGCCATGTGAAGATCAATGA 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52660371705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5