BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920821
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18800.1 | Symbols: NRP2 | NAP1-related protein 2 | chr1:648... 1208 0.0
AT1G74560.3 | Symbols: NRP1 | NAP1-related protein 1 | chr1:280... 566 1e-160
> AT1G18800.1 | Symbols: NRP2 | NAP1-related protein 2 | chr1:6481113-6483596
REVERSE LENGTH=1257
Length=1257
Score = 1208 bits (654), Expect = 0.0
Identities = 757/804 (94%), Gaps = 18/804 (2%)
Strand=Plus/Plus
Query 12 GAATTGAAAATGGTGGCAGACAAGAGCAAGAAGGCAAAAACCGAAGAAGAAAACGTCGAG 71
|||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 125 GAATCGAAAATGGTGACAGACAAGAGCAAGAAGGCGAAAACCGAAGAAGAAAACGTCGAG 184
Query 72 CAAATCGATAG-AGAGCTTGTCCTCTCTATTGAAAAACTACAAGAGATCCAAGACGACCT 130
||||||||| | ||||||||||||||| || ||||| || ||||||||||||||||||||
Sbjct 185 CAAATCGAT-GCAGAGCTTGTCCTCTCAATCGAAAAGCTTCAAGAGATCCAAGACGACCT 243
Query 131 CGAGAAGATAAACGAAAAGGCTAGTGATGAAGTGTTGGAAGTGGAGCAGAAATATAATGT 190
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CGAGAAGATAAATGAAAAGGCTAGTGATGAAGTGTTGGAAGTGGAGCAGAAATATAATGT 303
Query 191 GATAAGGAAACCTGTTTATGACAAGCGTAACGAGATTATCAAATCCATCCCTGATTTCTG 250
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 304 GATAAGGAAACCTGTTTATGACAAGCGTAACGAGATCATCAAAACCATCCCTGATTTCTG 363
Query 251 GTTAACTGCTTTCTTGAGTCACCCTGCTCTT-GGTGAACTTTTGACAGAAGAAGACCAAA 309
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 364 GTTAACTGCTTTCTTGAGTCACCCTGCT-TTAGGTGAACTTTTGACTGAAGAAGACCAAA 422
Query 310 AGATTTTCAAATACCTTAGCTCTCTTGATGTTGAGGATGCCAAAGATGTGAAATCTGGAT 369
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 AGATTTTCAAATATCTTAGCTCTCTTGATGTTGAGGATGCCAAAGATGTGAAATCTGGAT 482
Query 370 ACTCTATCACTTTTTACTTCAATCCCAATCCATTTTTTGAAGATGGAAAACTAACAAAGA 429
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 483 ACTCTATCACTTTTTCCTTCAATCCCAATCCATTTTTTGAAGATGGAAAACTGACAAAGA 542
Query 430 CTTTTACCTTTCTCGAAGAAGGGACAACAAAAATCACAGCCACGCCTATCAAATGGAAAG 489
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 543 CTTTTACCTTTCTCGAAGAAGGGACAACCAAAATCACAGCCACGCCTATCAAATGGAAAG 602
Query 490 AGGGCAAAGGCTTGTCAAATGGAGTGAATCACGAGAAGAATGGAAACAAACGTGCATTAC 549
||||||||||| || | |||||||||||||| |||||||||||||||||||||||| |||
Sbjct 603 AGGGCAAAGGCCTGGCGAATGGAGTGAATCATGAGAAGAATGGAAACAAACGTGCACTAC 662
Query 550 CTGAAGAGAGCTTCTTTACCTGGTTTCGTGATGCTCAACACAAGGAGGATGTTGAGGATG 609
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 663 CTGAAGAGAGCTTCTTTACCTGGTTTAGTGATGCTCAACACAAGGAGGATGTTGAGGATG 722
Query 610 AGATGCAAGACGAG--G-TTGCGGATATCATCAAGGAAGATTTGTGGCCCAACCCTCTCA 666
|||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||
Sbjct 723 AGATGCAAGACGAGCAGGTTGCAGATATCATCAAGGAAGATTTGTGGCCCAACCCTCTCA 782
Query 667 CCTACTTCAACAATGAGGCTGATGAAGAGGACTTTGATG-A-----TG--G-AGATGAAG 717
|||||||||||||||| |||||||||||||||||||||| | || | ||||||||
Sbjct 783 CCTACTTCAACAATGACGCTGATGAAGAGGACTTTGATGGAGACGATGATGGAGATGAAG 842
Query 718 AGG-GAAAAGAAGGTGATTCTGATGAAGATGATGACGAAGAAGACGGAGATGGTGAGGAA 776
||| |||| |||||||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct 843 AGGAGAAA-GAAGGTGACTCTGATGAAGATGATGACGAAGAAGACGAAGTTGGTGAGGAA 901
Query 777 TGATGGGAGGGTTCCCCAGAAACC 800
|||||| |||| | ||||||||||
Sbjct 902 TGATGGCAGGGATACCCAGAAACC 925
> AT1G74560.3 | Symbols: NRP1 | NAP1-related protein 1 | chr1:28017584-28020049
REVERSE LENGTH=1123
Length=1123
Score = 566 bits (306), Expect = 1e-160
Identities = 549/663 (83%), Gaps = 29/663 (4%)
Strand=Plus/Plus
Query 7 GAAGTGAATTGAAAATGGTGGCAGACAAGAGCAAGAA---G------GCA-A-AAA-CCG 54
|||||||| |||||||||| || |||||||||||||| | | | | ||| ||
Sbjct 136 GAAGTGAACTGAAAATGGTCGCGGACAAGAGCAAGAAGTCGAAAATTGAAGAGAAAGGCG 195
Query 55 AAGAAGAAAACGTCGAGCAAATCGATAG-AGAGCTTGTCCTCTCTATTGAAAAACTACAA 113
||||||||||| | ||||||||||| | ||||||||| ||||| ||||| || || ||
Sbjct 196 AAGAAGAAAACTTGGAGCAAATCGA-CGCAGAGCTTGTTCTCTCAATTGAGAAGCTTCAG 254
Query 114 GAGATCCAAGACGACCTCGAGAAGATAAACGAAAAGGCTAGTGATGAAGTGTTGGAAGTG 173
||||| |||||||||||||||||||| ||||||||||| ||||| || || ||||||||
Sbjct 255 GAGATTCAAGACGACCTCGAGAAGATTAACGAAAAGGCCAGTGACGAGGTCTTGGAAGTA 314
Query 174 GAGCAGAAATATAATGTGATAAGGAAACCTGTTTATGACAAGCGTAACG-AGATTATCAA 232
|||||||||||||| |||||| |||||||||| ||||||||||| || | || ||||| |
Sbjct 315 GAGCAGAAATATAACGTGATACGGAAACCTGTCTATGACAAGCGCAATGAAG-TTATCCA 373
Query 233 ATCCATCCCT-GATTTCTGGTTAACTGCTTTCTTGAGTCACCCTGCTCTT-GGTGAACTT 290
||| || ||| | ||| ||| | |||||||| |||||||| ||||| ||| || || ||
Sbjct 374 ATCGATTCCTGGCTTT-TGGATGACTGCTTTTTTGAGTCATCCTGC-CTTAGGCGACCTC 431
Query 291 TTGACAGAAGAAGACCAAAAGATTTTCAAATACCTT-AGCTCTCTTGATGTTGAGGATGC 349
||||| |||||||||||||||||||| || || ||| | |||||| || || ||||||||
Sbjct 432 TTGACTGAAGAAGACCAAAAGATTTTTAAGTA-CTTGAACTCTCTGGAAGTGGAGGATGC 490
Query 350 CAAAGATGTGAAATCTGGATACTCTATCACTTTTTACTTCAATCCCAATCCATTTTTTGA 409
||||||||||||||||||||||||||| |||||| |||||| | | || || || |||||
Sbjct 491 CAAAGATGTGAAATCTGGATACTCTATAACTTTTCACTTCACTTCAAACCCGTTCTTTGA 550
Query 410 AGATGGAAAACTAACAAAGACTTTTACCTTTC-TCGAAGAAGGGACAACAAAAATCACAG 468
|||| || || || ||||| ||||| |||| | |||||||| |||||||||||||| |
Sbjct 551 GGATGCCAAGCTTACCAAGACATTTAC-TTTCCTTGAAGAAGGAACAACAAAAATCACTG 609
Query 469 CCACGCCTATCAAATGGAAAGAGGGCAAAGGCTTGTCAAATGGAGTGAATCACGA-GA-A 526
| || |||||||||||||| |||||||| |||||| ||||||||||||| || || || |
Sbjct 610 CAACTCCTATCAAATGGAAGGAGGGCAAGGGCTTGCCAAATGGAGTGAACCATGATGATA 669
Query 527 -GAATGGAAACAAACGTGCATTACCTGAAGAGAGCTTCTTTACCTGGTTT-CGTGATGCT 584
||| ||||| ||||||||||| || || ||||| |||||||| |||||| | |||||||
Sbjct 670 AGAAAGGAAATAAACGTGCATTGCCAGAGGAGAGTTTCTTTACTTGGTTTAC-TGATGCT 728
Query 585 CAACACAAGGAGGATGTTGAGGATGAGATGCAAGACGAGGTTGCGGATATCATCAAGGAA 644
||||| ||||| |||| || ||||||||| || || |||||||| ||||| |||||||||
Sbjct 729 CAACATAAGGAAGATGCTGGGGATGAGATTCATGATGAGGTTGCTGATATTATCAAGGAA 788
Query 645 GAT 647
|||
Sbjct 789 GAT 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38931463925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5