BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920831
Length=1580
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18870.1 | Symbols: ICS2, ATICS2 | isochorismate synthase 2 ... 2464 0.0
> AT1G18870.1 | Symbols: ICS2, ATICS2 | isochorismate synthase
2 | chr1:6515429-6519282 FORWARD LENGTH=1852
Length=1852
Score = 2464 bits (1334), Expect = 0.0
Identities = 1492/1569 (95%), Gaps = 8/1569 (1%)
Strand=Plus/Plus
Query 1 TTCCTTCGCTGTTCACTGTATATGAACGGATGTGAGGCTGACCATAAAGCACCACTTGGT 60
||||| |||||| |||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 187 TTCCTACGCTGTACACTGTCTATGAACGGATGTGAGGCTGACCACAAAGCACCACTTGGC 246
Query 61 ACGGTAGAAACAAGGACTCTCTCCACGGTTTCGTCTCCGGCGGCCGCGACGGAGAGGCTG 120
|||||||||||||||||||| || ||||| | |||||||| ||||||||||||||||||
Sbjct 247 ACGGTAGAAACAAGGACTCTATCAACGGTGCCATCTCCGGCAGCCGCGACGGAGAGGCTG 306
Query 121 ATAACCGCCGTCTCTGACCTCAAATCTCAGTCGCCTCCATTCTCCTCCGGCATTGTCCGA 180
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 307 ATAACCGCCGTCTCTGACCTCAAATCTCAACCGCCTCCATTCTCCTCCGGCATTGTCCGA 366
Query 181 TTACAGGTACCAATTGAGCAGCAAATCGGAGCAATCGATTGGCTTCATGCGCAGAACGAG 240
||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||
Sbjct 367 TTACAGGTACCAATTGAGCAGAAAATTGGAGCAATCGATTGGCTTCATGCACAGAACGAA 426
Query 241 GTTCTTCCACGCAGTTTCTTTTCCCGTCGAAGTGACACCGTCCGTCCAGATCTTCTTCAA 300
||||||| |||||||||||||||||||| || || | | |||||||||||||||||||
Sbjct 427 ATTCTTCCTCGCAGTTTCTTTTCCCGTCGTAGCGATTCTGGCCGTCCAGATCTTCTTCAA 486
Query 301 GACTTCTCGAGTGACAATGGATCATTTGATCGTAATCCGGTTAGTGTTGCTGGAATCGGG 360
|||||||| |||||||||||||||| ||||| |||||| |||||||| ||||||||||||
Sbjct 487 GACTTCTCAAGTGACAATGGATCATCTGATCATAATCCAGTTAGTGTCGCTGGAATCGGG 546
Query 361 TCTGCTGTCTTTTTCCGCAATCTGGATCCGTTTTCTCATGATGACTGGAGATCGATCCAA 420
|||||||||||||||||| |||| || |||||||||||||||||||||||||| |||| |
Sbjct 547 TCTGCTGTCTTTTTCCGCGATCTCGACCCGTTTTCTCATGATGACTGGAGATCAATCCGA 606
Query 421 AGGTTTC-TGTCTTCAAAGTCTCCTCTGATTCGCGCGTATGGAGGTCTTCGATTTGATCC 479
||| ||| ||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 607 AGG-TTCTTGTCTTCAAAGTCTCCTCTGATTCGTGCCTATGGAGGTCTTCGATTTGATCC 665
Query 480 TAAC-GGGAAGATCGCTGTGGAATGGGAACATTTTGGCTCGTTTTACTTTACAGTGCCTC 538
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 666 T-ACAGGGAAGATCGCTGTGGAATGGGAACATTTTGGCTCGTTTTACTTTACAGTGCCCC 724
Query 539 AGGTCGAGTTTGATGAGTTTGGAGGAAGCTCAATGCTGGCTGCAACTGTTGCTTGGGACA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 AGGTCGAGTTTGATGAGTTTGGAGGAAGCTCAATGCTGGCTGCAACTGTTGCTTGGGACA 784
Query 599 ATGAGCTCTCATGGACGCTTGAAAATGCTATTGAAGCACTTCAGGAAACTATGCTTCAGG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 ATGAGCTCTCATGGACGCTTGAAAATGCTATTGAAGCACTTCAGGAAACTATGCTTCAGG 844
Query 659 TTTCTTCTGTTATAATGAGATTACG-CAGAGAATCTCTAGGAGTT-TCTATTCTTAGCAA 716
||||||||||||||||||||||||| | |||||||| |||||||| | | || |||||||
Sbjct 845 TTTCTTCTGTTATAATGAGATTACGGC-GAGAATCTTTAGGAGTTAT-TGTTGTTAGCAA 902
Query 717 GAACCATGTTCCAAGTGAAGGAGCCTATTACCCGGCTGTAAATAATGCTCTCGAGATTAT 776
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 903 GAACCATGTTCCAAGTGAAGGAGCCTATTACCCTGCTGTGAATAATGCTCTAGAGATTAT 962
Query 777 AAAAGACAAAAAATCACCGCTAAGCAAGGTTGTGCTTGCACGCAGCAGCAGAATCATTAC 836
|| |||||| | ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 963 CAAGGACAAACATTCACCCCTAAGCAAGGTTGTGCTTGCACGCAGTAGCAGAATCATTAC 1022
Query 837 GGATACCGACATTGATCCTATCGCTTGGTTAGCACGGTTGCAGTGTGAAGGACAAGACGC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 GGATACCGACATTGATCCTATCGCTTGGTTAGCACGGTTGCAGTGTGAAGGACAAGACGC 1082
Query 897 GTACCAGTTCTGTCTTCAACCACCCGGTGCACCAGCATTCATAGGGAACACGCCTGAGAG 956
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GTACCAATTCTGTCTTCAACCACCCGGTGCACCAGCATTCATAGGGAACACGCCTGAGAG 1142
Query 957 ACTCTTCCACAGAAAACACCTAGGTGTCTGCAGTGAGGCTTTGGCTGCAACAAGGCCTAG 1016
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 ACTCTTCCACAGAAAACATCTAGGTGTCTGCAGTGAGGCTTTGGCTGCAACAAGGCCTAG 1202
Query 1017 AGGTGATTCAAGGGTTCGTGAATTGGAGATAGAGCGCGACTTACTAACCAGTCCCAAAGA 1076
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1203 AGGTGATTCAAAGGTTCGTGAAATGGAGATAGAGCGCGACTTACTAACCAGTCCCAAAGA 1262
Query 1077 CGATCTTGAGTTTTCTATTGTCCGAGAGAATATAAGAGAAAAACTTAAAACCATATGTGA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 CGATCTTGAGTTTTCTATTGTCCGAGAGAATATAAGAGAAAAACTTAAAACCATATGTGA 1322
Query 1137 CAGGGTAGTAGTTGAACCCCAAAAATCAGTGAGAAAGCTTGCAAGAGTACAGCATCTATA 1196
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1323 CAGGGTAGTAGTTAAACCCCATAAATCAGTGAGAAAGCTTGCAAGAGTACAGCATCTATA 1382
Query 1197 TTCTCAATTGGCAGGACAGCTAAGAAGAGAAGATGATGAGTTTGACATCTTAACTGCTTT 1256
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1383 TTCTCAATTGGCAGGACAGCTAAAAAGAGAAGATGATGAGTTTAACATCTTAACTGCTTT 1442
Query 1257 GCATCCGACACCAGCTGTTTGCGGATGTCCAGTAGAGGAAGCAAGGCTTTTGATTAAGCA 1316
||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 1443 GCATCCGACGCCAGCTGTTTGCGGATGTCCAGTAGAAGAAGCTAGGCTTTTGATTAAACA 1502
Query 1317 AATTGAGTCATTTGATAGAGGAATGTATGCTGGACCTATTGGGTTCTTTGGTGGTGGAGA 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1503 AATTGAGTCATTTGATAGAGGAATGTATGCTGGACCTATTGGGTTCTTTGGTGGTGGGGA 1562
Query 1377 GAGTGAATTTTCTGTAGGCATAAGATCTGCTTTAGTCGAAAAGGGTCTTGGAGCATTGAT 1436
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1563 GAGTGAATTTTCTGTAGGCATACGATCTGCTTTAGTCGAAAAGGGTCTTGGAGCATTGAT 1622
Query 1437 CTATGCAGGAACAGGAATAGTCTCAGGAAGCAATCCATCCTCGGAGTGGAACGAGCTTGA 1496
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 1623 CTATGCAGGAACAGGAATCGTTTCAGGAAGCAATCCTTCCTCGGAGTGGAACGAGCTTGA 1682
Query 1497 GCTTAAGATCTCTCAGTTCACTAAGTCACTTGAACATGAGTCAGCTTTGCAACCGATCAA 1556
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1683 GCTTAAGATCTCTCAGTTCACTAAGTCACTTGAACATGAGTCAGCTTTGCAACCAATCAA 1742
Query 1557 CTGAAGAAA 1565
|| ||||||
Sbjct 1743 CTAAAGAAA 1751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78011646930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5