BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920833
Length=1669
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18890.1 | Symbols: ATCDPK1, CPK10, CDPK1, AtCPK10 | calcium... 2769 0.0
AT1G74740.1 | Symbols: CPK30, CDPK1A, ATCPK30 | calcium-depende... 1711 0.0
> AT1G18890.1 | Symbols: ATCDPK1, CPK10, CDPK1, AtCPK10 | calcium-dependent
protein kinase 1 | chr1:6522764-6525962 REVERSE
LENGTH=2568
Length=2568
Score = 2769 bits (1499), Expect = 0.0
Identities = 1621/1679 (97%), Gaps = 11/1679 (1%)
Strand=Plus/Plus
Query 1 CTGAGTTTCTTAACTCGGCCATGGGTAACTGTAACGCCTGTGTAAGG-C---CT-----G 51
|||||||||||||||| |||||||||||||||||||||||||||||| | || |
Sbjct 207 CTGAGTTTCTTAACTCAGCCATGGGTAACTGTAACGCCTGTGTAAGGCCAGACTCAAAAG 266
Query 52 ACTCAAAACCATCTCCGAAGCCGAAAAAACCCAATCGAGATCGGAAATTAAACCCATTCG 111
| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 AATCAAAACCATCTTCAAAGCCGAAAAAACCCAATCGAGATCGGAAATTAAACCCATTCG 326
Query 112 CCGGAGATTTCACCAGATCCCCTGCTCCAATACGTGTTCTCAAAGATGTAATCCCTATGA 171
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 327 CCGGAGATTTCACCAGATCCCCAGCTCCAATACGTGTTCTCAAAGATGTAATCCCTATGA 386
Query 172 GCCATCAAACTCAGATCAGCGACAAATACATCTTAGGTCGAGAATTAGGTCGCGGCGAAT 231
|| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 387 GCAATCAAACTCAGATCAGCGACAAATACATCTTAGGTCGTGAATTAGGTCGAGGCGAAT 446
Query 232 TCGGAATCACTTACCTCTGCACTGATCGTGAAACCCACGAAGCTTTAGCTTGCAAATCGA 291
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 447 TCGGAATCACTTACCTCTGTACTGATCGTGAAACCCACGAAGCTTTAGCTTGCAAATCGA 506
Query 292 TTTCAAAACGGAAA-CTTCGAACCGCCGTCGATATCGAAGACGTTCGTCGTGAGGTCGCG 350
||||||| | |||| |||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 507 TTTCAAAGC-GAAAGCTTCGAACAGCTGTCGATATCGAAGACGTTCGTCGTGAGGTAGCG 565
Query 351 ATTATGTCTACTTTACCTGAGCACCCAAACGTAGTTAAGCTTAAGGCTAGTTATGAGGAC 410
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 566 ATTATGTCTACTTTACCTGAGCATCCAAACGTAGTTAAGCTTAAGGCTAGTTATGAGGAT 625
Query 411 AACGAGAACGTGCATCTGGTTATGGAGCTTTGTGAAGGAGGTGAGCTTTTTGATCGGATT 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 AACGAGAACGTGCATCTGGTTATGGAGCTTTGTGAAGGAGGTGAGCTTTTTGATCGGATT 685
Query 471 GTTGCCAGAGGACATTACACGGAGCGTGCTGCTGCAGCTGTTGCGAGAACGATTGCTGAG 530
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 GTTGCTAGAGGACATTACACGGAGCGTGCTGCTGCAGCTGTTGCGAGAACGATTGCTGAG 745
Query 531 GTTGTGATGATGTGTCACTCTAATGGAGTTATGCATCGAGATTTGAAACCTGAGAATTTC 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 GTTGTGATGATGTGTCACTCTAATGGAGTTATGCATCGAGATTTGAAACCTGAGAATTTC 805
Query 591 TTGTTTGCTAACAAGAAGGAGAATTCTCCACTAAAGGCCATTGATTTCGGCTTGTCTGTG 650
||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 806 TTGTTTGCTAATAAAAAGGAGAATTCTCCACTAAAGGCTATTGATTTTGGCTTGTCTGTG 865
Query 651 TTCTTTAAACCTGGAGATAAGTTTACAGAGATTGTAGGAAGTCCGTATTATATGGCTCCA 710
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 TTCTTCAAACCTGGAGATAAGTTTACAGAGATTGTAGGAAGTCCGTATTATATGGCTCCA 925
Query 711 GAAGTGTTGAAGAGAGATTATGGACCAGAGGTTGATGTGTGGAGTGCAGGAGTTATTATC 770
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 926 GAAGTGTTGAAGAGAGATTATGGACCAGGGGTTGATGTGTGGAGTGCCGGAGTTATTATC 985
Query 771 TACATCTTGCTCTGTGGTGTTCCTCCGTTTTGGGCTGAGACTGAACAAGGTGTTGCTCTT 830
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 TATATCTTGCTCTGTGGTGTTCCTCCGTTTTGGGCTGAGACTGAACAAGGTGTTGCTCTT 1045
Query 831 GCGATCTTGCGGGGAGTTCTTGATTTTAAGAGAGACCCTTGGCCTCAGATATCAGAGAGC 890
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 GCGATCTTGCGGGGAGTTCTTGATTTTAAGAGAGACCCTTGGCCTCAGATATCAGAGAGT 1105
Query 891 GCCAAGAGTCTTGTGAAGCAGATGTTGGATCCGGATCCGAGTATGCGGTTAACTGCTCAG 950
|||||||| ||||||||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 1106 GCCAAGAGCCTTGTGAAGCAGATGTTGGATCCTGATCCGACTAAGCGGTTAACTGCTCAG 1165
Query 951 CAAGTGTTAGCTCACCCATGGATACAGAATGCAAAGAAAGCTCCCAATGTTCCTTTAGGA 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 CAAGTGTTAGCTCACCCATGGATACAGAATGCAAAGAAAGCTCCCAATGTTCCTTTAGGA 1225
Query 1011 GATATAGTCAGATCGAGGTTGAAGCAGTTCTCTATGATGAACAGATTCAAAAAGAAAGTT 1070
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 GATATAGTCAGATCTAGGTTGAAGCAGTTCTCTATGATGAACAGATTCAAAAAGAAAGTT 1285
Query 1071 CTTCGTGTAATCGCGGAGCACTTGTCTATTCAAGAGGTTGAAGTGATCAAGAACATGTTC 1130
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1286 CTTCGTGTAATTGCGGAGCACTTGTCTATTCAAGAGGTTGAAGTGATAAAGAACATGTTC 1345
Query 1131 TCACTTATGGATGATGATAAGGATGGTAAAATAACTTACCCAGAACTCAAAGCTGGGCTT 1190
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1346 TCACTGATGGATGATGACAAGGATGGTAAAATAACTTACCCGGAACTCAAAGCTGGGCTT 1405
Query 1191 CAGAAGGTCGGTTCACAACTTGGTGAACCAGAGATCAAAATGTTGATGGAAGTGGCGGAT 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 CAGAAGGTCGGTTCACAACTTGGTGAACCAGAGATCAAAATGTTGATGGAAGTGGCGGAT 1465
Query 1251 GTCGATGGAAATGGGTTTCTGGATTATGGAGAGTTTGTAGCTGTGATAATTCACTTGCAG 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 GTCGATGGAAATGGGTTTCTGGATTATGGAGAGTTTGTAGCTGTGATAATTCACTTGCAG 1525
Query 1311 AAGATAGAGAATGATGAACTTTTCAAACTAGCTTTTATGTTCTTCGACAAAGATGGAAGT 1370
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1526 AAGATAGAGAATGATGAACTTTTCAAACTAGCTTTTATGTTTTTCGACAAAGATGGAAGT 1585
Query 1371 ACATACATTGAACTTGATGAGCTACGAGAAGCTTTAGCTGATGAGTTAGGGGAACCAGAC 1430
|||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||
Sbjct 1586 ACATACATTGAACTTGATGAGCTACGGGAAGCTTTAGCGGATGAGTTAGGCGAGCCAGAC 1645
Query 1431 ACCAGTGTTCTAAGCGACATTATGCGTGAAGTTGACACTGACAAGGACGGGCGTATAAAC 1490
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1646 GCCAGTGTTCTAAGCGACATCATGCGTGAAGTTGACACTGACAAGGACGGACGTATAAAC 1705
Query 1491 TATGATGAGTTTGTGGCGATGATGAAAGCTGGAACTGACTGGAGAAAGGCATCAAGACAA 1550
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1706 TATGATGAGTTTGTGACGATGATGAAAGCTGGAACTGACTGGAGAAAGGCATCGAGACAA 1765
Query 1551 TATTCAAGAGAGAGGTTCAAAAGCTTAAGCCTTAACTTGATGAAAGATGGGTCATTGCAT 1610
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1766 TATTCAAGAGAGAGGTTCAAAAGCTTAAGCATTAACTTGATGAAAGATGGGTCATTGCAT 1825
Query 1611 CTCCATGACGCTCTCACTGGACAAACTGTTCCTGTTTAATTTTATTCGTTATCACCAAA 1669
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1826 CTCCATGACGCTCTCACTGGACAAACTGTTCCTGTTTAAATTTATTCGTTATCACCAAA 1884
> AT1G74740.1 | Symbols: CPK30, CDPK1A, ATCPK30 | calcium-dependent
protein kinase 30 | chr1:28079946-28082644 REVERSE LENGTH=2047
Length=2047
Score = 1711 bits (926), Expect = 0.0
Identities = 1332/1528 (87%), Gaps = 28/1528 (2%)
Strand=Plus/Plus
Query 158 TGTAATCCCTATGAGCCATCAAACTCAGATCAGCGACAAATACATCTTAGGTCGAGAATT 217
||| || ||||||||||||||| |||||||||||||||| ||||||||||| |||||| |
Sbjct 303 TGTGATTCCTATGAGCCATCAATCTCAGATCAGCGACAAGTACATCTTAGGACGAGAACT 362
Query 218 AGGTCGCGGCGAATTCGGAATCACTTACCTCTGCACTGATCGTGAAACCCACGAAGCTTT 277
||||||||||||||||||||||| || || || || ||| | || || | ||||||||
Sbjct 363 CGGTCGCGGCGAATTCGGAATCACGTATCTTTGTACAGATAGAGAGACTCGTGAAGCTTT 422
Query 278 AGCTTGCAAATCGAT-TTCAAAACGGAAA-CTTCGAACCGCCGTCGATATCGAAGACGTT 335
|||||||||||| || | ||| | |||| || ||||||||||||||| | ||||||||
Sbjct 423 AGCTTGCAAATCAATCTCCAAGA--GAAAGCTCCGAACCGCCGTCGATGTGGAAGACGTC 480
Query 336 CGTCGTGAGGTCGCGATTATGTCTACTTTACCTGAGCACCCAAACGTAGTTAAGCTTAAG 395
|||||||| ||| |||| ||||| |||||||| || ||||||||||| || || |||||
Sbjct 481 CGTCGTGAAGTCACGATCATGTCAACTTTACCGGAACACCCAAACGTTGTGAAACTTAAA 540
Query 396 GCTAGTTATGAGGACAACGAGAACGTGCATCTGGTTATGGAGCTTTGTGAAGGAGGTGAG 455
|| | ||||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 541 GCGACTTATGAGGATAACGAGAACGTGCATCTTGTGATGGAGCTTTGTGAAGGAGGTGAG 600
Query 456 CTTTTTGATCGGATTGTTGCCAGAGGACATTACACGGAGCGTGCTGCTGC-AGCTGTTGC 514
|||||||||||||||||||||||||||||||| || |||||||| || || | | || ||
Sbjct 601 CTTTTTGATCGGATTGTTGCCAGAGGACATTATACAGAGCGTGCGGCGGCTACC-GTCGC 659
Query 515 GAGAACGATTGCTGAGGTTGTGATGATGTGTCAC-TCTAATGGAGTTATGCATCGAGATT 573
||||||||| || |||||||||| ||||||||| || ||||| ||||||||| ||||||
Sbjct 660 GAGAACGATCGCGGAGGTTGTGAGGATGTGTCATGTC-AATGGTGTTATGCATAGAGATT 718
Query 574 TGAAACCTGAGAATTTCTTGTTTGCTAACAAGAAGGAGAATTCTCCACTAAAGGCCATTG 633
|||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 719 TGAAGCCTGAGAATTTCTTGTTTGCTAACAAGAAGGAGAATTCTGCACTTAAGGCTATTG 778
Query 634 ATTTCGGCTTGTCTGTGT-TCTTTAAACCTGGAGATAAGTTTACAGAGATTGTAGGAAGT 692
|||| || || ||||| | |||||||||||||||| | ||||||||||||||| ||||||
Sbjct 779 ATTTTGGTTTATCTGT-TCTCTTTAAACCTGGAGAGAGGTTTACAGAGATTGTTGGAAGT 837
Query 693 CCGTATTATATGGCTCCAGAAGTGTTGAAGAGAGATTATGGACCAGAGGTTGATGTGTGG 752
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 838 CCTTATTATATGGCTCCAGAAGTGTTGAAGAGAAATTATGGACCAGAGGTTGATGTGTGG 897
Query 753 AGTGCAGGAGTTATTATCTACATCTTGCTCTGTGGTGTTCCTCCGTTTTGGGCTGAGACT 812
||||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 898 AGTGCTGGAGTTATCCTCTACATCTTGCTTTGTGGTGTTCCTCCGTTTTGGGCAGAGACT 957
Query 813 GAACAAGGTGTTGCTCTTGCGATCTTGCGGGGAGTTCTTGATTTTAAGAGAGACCCTTGG 872
||||||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||
Sbjct 958 GAACAAGGTGTGGCTCTTGCCATCTTGAGGGGAGTTCTTGATTTTAAGAGAGATCCTTGG 1017
Query 873 CCTCAGATATCAGAGAGCGCCAAGAGTCTTGTGAAGCAGATGTTGGATCCGGATCCGAGT 932
| ||||||||||||||||| ||||| |||||||||||||||||||| || ||| | | |
Sbjct 1018 TCGCAGATATCAGAGAGCGCAAAGAGCCTTGTGAAGCAGATGTTGGAACCTGATTCAACT 1077
Query 933 ATGCGGTTAACTGCTCAGCAAGTG-TTAGCTCACCCATGGATACAGAATGCAAAGAAAGC 991
| ||| || |||||||||||||| || | |||||| |||||||||||||||||||||||
Sbjct 1078 AAGCGTTTGACTGCTCAGCAAGTTCTT-GATCACCCTTGGATACAGAATGCAAAGAAAGC 1136
Query 992 TCCCAATGTTCCTTTAGGAGATATAGTCAGATCGAGGTTGAAGCAGTTCTCTATGATGAA 1051
||| |||||||||||||| ||||| || || || ||||||||||| ||||| ||||||||
Sbjct 1137 TCCAAATGTTCCTTTAGGGGATATTGTTAGGTCAAGGTTGAAGCAATTCTCCATGATGAA 1196
Query 1052 CAGATTCAAAAAGAAAGTTCTTCGTGTAATCGCGGAGCACTTGTCTATTCAAGAGGTTGA 1111
||||| |||||||||| ||| ||||| ||||| || ||||||||||||||||| |||||
Sbjct 1197 TAGATTGAAAAAGAAAGCTCTGCGTGTTATCGCCGAACACTTGTCTATTCAAGAAGTTGA 1256
Query 1112 AGTGATCAAGAA-CATGTTCT-CACTTATGGATGATGATAAGGATGGTAAAATAACTTAC 1169
|||||||| ||| |||||| | | || ||||||||||| || || ||||||||| | ||
Sbjct 1257 AGTGATCA-GAAACATGTT-TACGCTGATGGATGATGACAACGACGGTAAAATATCATAT 1314
Query 1170 CCAGAACTCAAAGCTGGGCTTCAGAAGGTCGGTTCACAACTTGGTGAACCAGAGATCAAA 1229
| |||||||| |||||| || | ||| |||||||||||||| ||||||||||||||||||
Sbjct 1315 CTAGAACTCAGAGCTGGACTCCGGAAAGTCGGTTCACAACTGGGTGAACCAGAGATCAAA 1374
Query 1230 ATGTTGATGGAAGTGGCGGATGTCGATGGAAATGGGTTTCT-GGATTATGGAGAGTTTGT 1288
|||| ||||||||||||||||| |||||||||| | || ||| ||||||||||||||
Sbjct 1375 TTGTTAATGGAAGTGGCGGATGTTAATGGAAATGGATG-CTTGGACTATGGAGAGTTTGT 1433
Query 1289 AGCTGTGATAATTCACTTGCAGAAGATAGAGAATGATGAACTTTTCAAACTAGCTTTTAT 1348
||| ||||||||||||||||||||||| ||||||||||| | ||||| || |||||||||
Sbjct 1434 AGCAGTGATAATTCACTTGCAGAAGATGGAGAATGATGAGCATTTCAGACAAGCTTTTAT 1493
Query 1349 GTTCTTCGACAAAGATGGAAGTACATACATTGAA-CTTGATGAGCTACGAGAAGCTTTAG 1407
|||||| ||||||||||||||| |||||| ||| | || || ||||| |||||||||
Sbjct 1494 GTTCTTTGACAAAGATGGAAGTGGATACATCGAATCA-GAAGAACTACGTGAAGCTTTAA 1552
Query 1408 CTGATGAGTTAGGGGAACCAGACACCAGTGTTCTAAGCGACATTATGCGTGAAGTTGACA 1467
| || |||||||| |||||||||| ||||||| ||| ||| || ||||||||||| ||||
Sbjct 1553 CCGACGAGTTAGGTGAACCAGACAACAGTGTTATAATCGATATAATGCGTGAAGTCGACA 1612
Query 1468 CTGACAAGGACGGGCGTATAAACTATGATGAGTTTGTGGCGATGATGAAAGCTGGAACTG 1527
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1613 CTGACAAGGACGGAAAAATAAACTATGATGAGTTTGTGGTGATGATGAAAGCTGGAACTG 1672
Query 1528 ACTGGAGAAAGGCATCAAGACAATATTCAAGAGAGAGGTTCAAAAGCTTAAGCCTTAA-C 1586
| ||||||||||||||||||||||| |||||||||||||| |||||||||||| |||| |
Sbjct 1673 ATTGGAGAAAGGCATCAAGACAATACTCAAGAGAGAGGTTTAAAAGCTTAAGC-TTAAAC 1731
Query 1587 TTGATGAAAGATGGGTCATTGCATCTCCATGACGCTCTCACTGGACAAACTGTTCCTGTT 1646
||||||||||| |||||| ||||||| || ||||| |||||||||||| || || | |||
Sbjct 1732 TTGATGAAAGACGGGTCAATGCATCTACACGACGCACTCACTGGACAATCTATTGCAGTT 1791
Query 1647 TAAT-TTTA---TTCGTT-ATCACCAAA 1669
| || |||| || ||| |||||||||
Sbjct 1792 TGATCTTTACACTT-GTTTATCACCAAA 1818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82479495435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5