BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920839
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18970.1 | Symbols: GLP4 | germin-like protein 4 | chr1:6554... 1011 0.0
AT1G18980.1 | Symbols: | RmlC-like cupins superfamily protein ... 798 0.0
> AT1G18970.1 | Symbols: GLP4 | germin-like protein 4 | chr1:6554568-6555377
REVERSE LENGTH=810
Length=810
Score = 1011 bits (547), Expect = 0.0
Identities = 629/669 (94%), Gaps = 3/669 (0%)
Strand=Plus/Plus
Query 7 CTCATCAATAAGCTATGGCTACTCTCCAAat-ctcttcttctcttttcagatctttcctt 65
|||||||| |||||||||||||||||||||| | ||||| ||||||| ||||||||||||
Sbjct 1 CTCATCAA-AAGCTATGGCTACTCTCCAAATAC-CTTCTGCTCTTTTAAGATCTTTCCTT 58
Query 66 ctaacgctttgtctcttcgtaatcccatctctctcATCTGATTCTGATCCTTTACAAGAC 125
|| | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CTTATGTTTTGTCTCTTTGTAATCCCATCTCTCTCATCTGATTCTGATCCTTTACAAGAC 118
Query 126 TTCTGCATCGGCGATCTCAAAGCTTCTCCTTCCATCAATGGCTTTCCATGCAAATCAGCC 185
|||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 119 TTCTGCGTTGGCGATCTCAAAGCTTCTGCTTCCATCAATGGCTTTCCATGCAAATCAGCC 178
Query 186 GTTTCTGCTTCTGACTTCTTCTACTCCGGTTTAGGTGGTCCCTTAGACACTTCGAACCCT 245
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 179 GTTTCTGCTTCTGACTTCTTCTACTCCGGTTTAGGTGGCCCCTTAGACACGTCAAACCCT 238
Query 246 AACGGTGTTACCGTTGCTCCCGCCAACGTCCTAACCTTTCCGGGTCTAAACACTTTAGGA 305
||||| || ||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 239 AACGGAGTAACCGTTGCTCCCGCCAACGTCTTAACCTTCCCGGGTCTAAACACTTTAGGA 298
Query 306 ATCTCGATGAACAACGTTGAATTAGCTCCAGGCGGTGTAAATCCGCCTCACTTGCACCCG 365
||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 299 ATCTCGATGAATAACGTTGAGCTAGCTCCAGGAGGTGTAAATCCGCCTCACTTGCACCCG 358
Query 366 CGTGCAACCGAAGTAGGAACTATAATCGAAGGCTCGGTTTTTGTCGGATTCTTGACTACC 425
||||||||||||||||||||| | |||||||||||||| |||||||||||||||| ||||
Sbjct 359 CGTGCAACCGAAGTAGGAACTGTGATCGAAGGCTCGGTGTTTGTCGGATTCTTGAGTACC 418
Query 426 AACAACACTTTGTTCTCAAAGGTTTTGAATGCCGGAGAGGTGTTTGTTATACCTAGAGGA 485
|||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||
Sbjct 419 AACAACACTTTGTTCTCAAAAGTTTTGAATGCAGGAGAGGCGTTTGTTATCCCTAGAGGA 478
Query 486 TTGGTTCATTTCCAATGGAACGTTGGCCAAGTGAAAGCGCGCATGATAACCGCTTTTAAC 545
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 479 TTGGTTCATTTCCAATGGAACGTTGGCCAAGTGAAAGCGCGAATGATAACCGCTTTTAAC 538
Query 546 AGCCAACTTCCAGGAGCAGTTGTTTTGCCTAGTACTCTGTTTGGCTCCAACCCTGAGATT 605
||||| || |||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 539 AGCCAGCTCCCAGGAGCAGTTGTTTTGCCTAGTACTCTGTTCGGCTCGAAACCTGAGATT 598
Query 606 CCAAACGCAGTCCTGACCAGAGCGTTTAGAACTGATGTTACAACTGTGCAGAATCTAAAG 665
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||
Sbjct 599 CCAAACGCAGTCCTGACCAGAGCGTTTAGGACTGATGATACAACTGTGCAGAATCTCAAG 658
Query 666 TCCAAGTTT 674
|||||||||
Sbjct 659 TCCAAGTTT 667
> AT1G18980.1 | Symbols: | RmlC-like cupins superfamily protein
| chr1:6557254-6558045 REVERSE LENGTH=792
Length=792
Score = 798 bits (432), Expect = 0.0
Identities = 593/672 (88%), Gaps = 5/672 (1%)
Strand=Plus/Plus
Query 5 TTCTCATCAATAAGCTATGGCTACTCTCCAAatctcttcttctcttttcagatctttcct 64
||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 5 TTCTCATCAAT-AGCCATGACTACTCTCCAAATCTCTTCTTCTCTTTTCAGATCTTTTCT 63
Query 65 tctaacgctttgtctcttcgtaatcccatctctctcATCTGATTCTGATCCTTTACAAGA 124
||| | | ||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 64 TCTTGTGATCTGTGTCTTTGTAATCCCATCTCTCTCATCTGATTCTGATCCTTTACAAGA 123
Query 125 CTTCTGCATCGGCGATCTCAAAGCTTCTCCTTCCATCAATGGCTTTCCATGCAAATCAGC 184
||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 124 CTTCTGCGTCGGCGATCTCAAAGCTTCTCCTTCCATCAATGGCTTCCCTTGCAAATCATC 183
Query 185 CGTTTCTGCTTCTGACTTCTTCTACTCCGGTTTAGGTGGTCCCTTAGACACTTCGAACCC 244
||| || |||||||||||||||| |||||| ||||||||||| ||| |||| |||| |||
Sbjct 184 CGTCTCCGCTTCTGACTTCTTCTTCTCCGGCTTAGGTGGTCCTTTAAACACCTCGACCCC 243
Query 245 TAACGGTGTTA-CCGTTGCTCCCGCCAACGTCCTAACCTTTCCGGGTCTAAACACTTTAG 303
|||||| || | ||||| | |||||||| |||||||| ||||||||||||||||||||||
Sbjct 244 TAACGGCGT-AGCCGTTTCCCCCGCCAATGTCCTAACTTTTCCGGGTCTAAACACTTTAG 302
Query 304 GAATCTCGATGAACAACGTTGAATTAGCTCCAGGCGGTGTAAATCCGCCTCACTTGCACC 363
|| |||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |
Sbjct 303 GACTCTCGATGAACAACGTTGAATTCGCTCCAGGCGGTGTAAATCCTCCTCACTCGCATC 362
Query 364 CGCGTGCAACCGAAGTAGGAACTATAATCGAAGGCTCGGTTTTTGTCGGATTCTTGACTA 423
||||||||||||||| |||| | | ||||||||||||||||||||||| ||||||||||
Sbjct 363 CGCGTGCAACCGAAGCAGGAGTTGTGATCGAAGGCTCGGTTTTTGTCGGGTTCTTGACTA 422
Query 424 CCAACAACACTTTGTTCTCAAAGGTTTTGAATGCCGGAGAGGTGTTTGTTATACCTAGAG 483
| ||||||||| ||||||| ||||||||||||||||||||| |||||||| | |||||||
Sbjct 423 CTAACAACACTCTGTTCTCGAAGGTTTTGAATGCCGGAGAGATGTTTGTTGTCCCTAGAG 482
Query 484 GATTGGTTCATTTCCAATGGAACGTTGGCCAAGTGAAAGCGCGCATGATAACCGCTTTTA 543
|||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||| |
Sbjct 483 GATTGGTTCATTTCCAATGGAATGTTGGTAAAGTGAAAGCGCGTTTGATAACCTCTTTCA 542
Query 544 ACAGCCAACTTCCAGGAGCAGTTGTTTTGCCTAGTACTCTGTTTGGCTCCAACCCTGAG- 602
|||| || ||||||||| | | |||| |||||||||||||||||||||| |||||| |
Sbjct 543 ACAGTCAGCTTCCAGGATCGGCTGTTCTGCCTAGTACTCTGTTTGGCTCAAACCCT-ACC 601
Query 603 ATTCCAAACGCAGTCCTGACCAGAGCGTTTAGAACTGATGTTACAACTGTGCAGAATCTA 662
|||||||| || || |||||| | ||||||| ||||||| | |||||| | || ||
Sbjct 602 ATTCCAAATGCTGTTTTGACCAAAACGTTTAGGACTGATGATGTTACTGTGAACAAACTC 661
Query 663 AAGTCCAAGTTT 674
||||||||||||
Sbjct 662 AAGTCCAAGTTT 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34410390695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5