BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920844

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G19020.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   427    2e-119


> AT1G19020.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G48180.1); 
Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:6568073-6568597 
FORWARD LENGTH=525
Length=525

 Score =  427 bits (231),  Expect = 2e-119
 Identities = 269/287 (94%), Gaps = 4/287 (1%)
 Strand=Plus/Plus

Query  1    TTTGAGAAAGAGGATATAC---AATGAACGGAACATCGTGGGCTGACCAGTGGGACAATA  57
            |||||| |||| |||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct  48   TTTGAG-AAGACGATATACAATAATGAACGGAACATCGTGGGCTGACCAGTGGGACAATA  106

Query  58   GCGGAGGCTCTGCCAGAGGAGGACAAATCGGCAGTGGCGCCGTCGTGAGTAGCAGCGGAA  117
            |||| | |||||||| |||||| | ||||||||| |||||||||||||| ||||||||||
Sbjct  107  GCGGCGACTCTGCCAAAGGAGGCCGAATCGGCAGCGGCGCCGTCGTGAGAAGCAGCGGAA  166

Query  118  GTGGAGCAACGTCAAACACGGCTAAGTACAAGGAGAAAATGGGACAAGGATTAGACAAAA  177
            |||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||
Sbjct  167  GTGGAGCAACGTCAAACACGACCAAGTACAAGGAGAAAATGGGACAAGGGTTAGACAAAA  226

Query  178  CAAAAGCTGTAGCTTCTTCTGGTTTTAAGAAGCTCAAGACTGGTTCTGCTATTGGTTTTC  237
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  227  CCAAAGCTGTAGCTTCTTCTGGTTTTAAGAAGCTCAAGACTGGTTCTGCTATTGGTTTTC  286

Query  238  GTTGGGTCAAAGACAAGTATCACAAAACCACACACAAATAATAAAGA  284
            |||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct  287  GTTGGGTCAAGGACAAGTATCACAAAACCACACACAAACAATAAAGA  333



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13773363226


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5