BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg920858 Length=1108 Score E Sequences producing significant alignments: (Bits) Value AT1G19160.1 | Symbols: | F-box family protein | chr1:6614162-6... 1195 0.0 AT5G52610.1 | Symbols: | F-box and associated interaction doma... 859 0.0 > AT1G19160.1 | Symbols: | F-box family protein | chr1:6614162-6615214 REVERSE LENGTH=1053 Length=1053 Score = 1195 bits (647), Expect = 0.0 Identities = 931/1067 (87%), Gaps = 23/1067 (2%) Strand=Plus/Plus Query 24 ATGATTCCTGAAGACCTTTTGGACGAAATTCTCCTAAGGTTACCTGTGAAAAC-CTTGGC 82 |||||||||||||||| ||||| ||||||||||||||| || ||||||||| | | | || Sbjct 1 ATGATTCCTGAAGACCCTTTGGTCGAAATTCTCCTAAGATTGCCTGTGAAATCAC-TAGC 59 Query 83 GAGATGTCTATGCGTATCCAAGCATTGCTACTCAATCATCCGCAGTCGACGTTTCATCAA 142 ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 60 GAGATTTCTATGCGTATCCAAGCGTTGCTACTCAATCATCCGCAGTCGACATTTCATCAA 119 Query 143 CTTATACCAGTCTCGATCCTCTACTCGTGAGTCACGTGTCATGTTTGCTTTCCGTGATGT 202 ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CTTATACCAATCTCGAGCCTCTACTCGTGAGTCACGTGTCATGTTTGCTTTCCGTGATAC 179 Query 203 ATACACATTTCTTCGCTGGTATTTCTTCTCCTTACCTCAACCACCTTCTTTAGTTACCAA 262 | |||||||| |||||||| |||||||||| ||| ||||||||||||||| ||||| | Sbjct 180 AAACACATTTTTTCGCTGGAATTTCTTCTCGTTATCTCAACCACCTTCTTCAGTTA-C-- 236 Query 263 TTCAACATGCTGCATCGATAGTACATCTTTTTGTATGCCTGTTTGCGTCCACGGCTTGAT 322 | | | | ||||||||||| |||| ||||||||||||||||||| | |||||||| Sbjct 237 --C-A-A---T--ATCGATAGTACTTCTTATTGTATGCCTGTTTGCGTCAATGGCTTGAT 287 Query 323 ATGTGTCGAACACATGTTTCGGCTGTGGATATGCAATCCTGTCACGGGAAAGGTCGCACT 382 ||||||||||||||||||||| |||||||||||||||||||||||| |||| || |||| Sbjct 288 ATGTGTCGAACACATGTTTCGACTGTGGATATGCAATCCTGTCACGAAAAAGATCACACT 347 Query 383 GTTGCCCCA-ACCAGGTCCCCGTGAACAATTCACGACATGGTATATGGGATATGATCCTA 441 || ||| | | ||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 348 TTTTCCCGATTGC-GGTCCCCGTAAACAATTCACGACATGGTATATGGGATATGATCCAA 406 Query 442 TCAATTACCATTATAAGGTATTGTTTTTGTCaaaaaaaTGTTTATTAGATGCATATAAAG 501 ||||||| || || ||||| |||| |||||||| | || |||| ||| | | |||| || Sbjct 407 TCAATTATCAATACAAGGTCTTGTATTTGTCAAGAGAACATTTAATAGCTCCTTATATAG 466 Query 502 TGGAAGTGTTTACATTCGGAGAAGAAAGTACATGGAAAACGATCGA-G--GATGGGAATA 558 |||||||||| ||||| ||||| ||| || | |||| || |||||| | |||| |||| Sbjct 467 TGGAAGTGTTCACATTTGGAGATGAAGGTTCGTGGAGAATGATCGAGGCCGATGAGAAT- 525 Query 559 TT-CACTTTCCAGAAACCAGAGGAATATGCATCCACGGGGTTTTGTATTACGGTGCTCAC 617 || |||| |||||||||||||||| |||||| |||||||||| ||||||| |||||| | Sbjct 526 TTCCACTCTCCAGAAACCAGAGGAGTATGCACCCACGGGGTTCTGTATTATGGTGCTTAT 585 Query 618 ACGGGGAATGGACCGAAAATTGTGAGGTTCGATGTGAGGACGGAAAAGTTTGGTAAGTTC 677 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 586 ACGGGGGATGGAGCGAAAATTGTGAGGTTCGATGTGAGGACGGAAAAGTTTGGTAAGTTC 645 Query 678 ATTGAATTTCCGGCTGAGGCTTGTGGTATTTATGGTGTGTGTTTGGGTTTCTATACCCTT 737 |||||| | ||||| ||||||||| ||||| ||||||| | ||||||| ||||||||||| Sbjct 646 ATTGAAATGCCGGCCGAGGCTTGTAGTATTCATGGTGTCTATTTGGGTCTCTATACCCTT 705 Query 738 GTGGCCTACCAAGGGAAGCTAGCTTTACTTGCTTCAAAAACCATAAGCATATATGATTTA 797 ||| ||||||||||||| ||| |||||||||| || || | | ||||| |||||||||| Sbjct 706 TTGGACTACCAAGGGAAGTTAGGTTTACTTGCTACACAAGCTACAAGCACATATGATTTA 765 Query 798 TGGGTTTTGGAAGATGCCGAGAAACATGCGTGGTCTAAGGTTTCTATCGTCATAACTCCA 857 ||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||| | Sbjct 766 TGGGTTTTGGAAGATGCGGAGAAACATGAGTGGTCTAAGGTTTCTATCTTCATAACTCGA 825 Query 858 GAGATGTGTTCGTACGAGCTTATTTGGCCAGGTGTGACGGGTTTTGTTGCTGGTAGTGAT 917 ||||||||| |||| || |||||||||||||||||| |||||||||||||||||||| | Sbjct 826 GAGATGTGTCCGTATGATCTTATTTGGCCAGGTGTGGTGGGTTTTGTTGCTGGTAGTGGT 885 Query 918 GAGCTTATAGTTACTGCTCGTGATCAATTTCATGAGTTTCATCTTGTCTATGTTGATCTC 977 |||||||||||||||||||||||| | || | |||||||| || |||||||||||||| Sbjct 886 GAGCTTATAGTTACTGCTCGTGATGAGCTTGGTCAGTTTCATATTCTCTATGTTGATCTC 945 Query 978 AAGACGCAA-CGTTCGAGGGAAGTTCGGTTCGAAGGAATCAGATCCTCATTTGGATCATC 1036 |||| | || ||||||||||||||| ||||||||| ||||| | |||| ||||||||| | Sbjct 946 AAGAAG-AATCGTTCGAGGGAAGTTTGGTTCGAAGAAATCACACCCTCGTTTGGATCAGC 1004 Query 1037 GCTGGTGCTTGCTTTCACGGATTACGTTGAAAGTATTGTTTTACTGT 1083 |||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 1005 TCTGGTGCTTGCTTTCACGGATTACGTTGAAAGTATTGTCTTAATGT 1051 > AT5G52610.1 | Symbols: | F-box and associated interaction domains-containing protein | chr5:21346423-21347478 REVERSE LENGTH=1056 Length=1056 Score = 859 bits (465), Expect = 0.0 Identities = 877/1075 (82%), Gaps = 32/1075 (3%) Strand=Plus/Plus Query 24 ATGATTCCTGAAGACCTTTTGGACGAAATTCTCCTAAGGTTACCTGTGAAAACCTTGGCG 83 |||||| ||||||||||||||| |||||||||| |||| || ||||||||| || | || Sbjct 1 ATGATTTCTGAAGACCTTTTGGTCGAAATTCTCTTAAGATTGCCTGTGAAACCCCTAGCT 60 Query 84 AGATGTCTATGCGTATCCAAGCATTGCTACTCAATCATCCGCAGTCGACGTTTCATCAAC 143 ||||| ||||| || | ||||| ||| | ||||||||||||||||| |||||||||| Sbjct 61 AGATGCCTATGTGTGTGCAAGCTTTGGGCCACAATCATCCGCAGTCGATATTTCATCAAC 120 Query 144 TTATACCAGTCTCGATCCTCTACTCGTGAGTCACGTGTCATGTTTGCTTTCCGTGATGTA 203 |||||||| |||||||||||||||||| || || ||||||||||||||| |||||| || Sbjct 121 TTATACCAATCTCGATCCTCTACTCGTCAGCCATATGTCATGTTTGCTTTACGTGATATA 180 Query 204 TACACAT-TTCTTCGCTGGTATTTCTTCTCCTTACCTCAACC-ACCTTCTTTAGTTACCA 261 | ||||| || ||| ||| ||||||||| | | | || || ||||||||| ||||||| Sbjct 181 TTCACATCTT-GTCGTTGGCATTTCTTCT-CGT-CATC--CCAACCTTCTTTGGTTACCA 235 Query 262 ATTCAACATGCTGCATCGATAGTACA-TCTTTTTGTATGCCTGTTTGCGTCCACGGCTTG 320 | | |||||| || | | | || | |||| | || ||||| ||| ||| | |||||| Sbjct 236 AGGCGACATGCAGC-GCCA-A-TA-ATTCTTCTCATACGCCTGATTGTGTCAATGGCTTG 291 Query 321 ATATGTGTCGAACACATGTTTCGGCTGTGGATATGCAATCCTGTCACG-GGAAAGGTCGC 379 |||||||||||| |||||| || |||||||||| |||||||| |||| | || ||| | Sbjct 292 ATATGTGTCGAATACATGTCTCAACTGTGGATATCCAATCCTGCCACGCGTAAGGGT-GT 350 Query 380 ACT-GTTGCCCCAA-CCAGGTCCCCGTGAACAA-TTCACGACATGGTATATGGGATATGA 436 ||| | |||||||| || | ||| | | || || |||| || |||||||||||||||||| Sbjct 351 ACTCG-TGCCCCAATCC-GCTCCACATCAA-AAGTTCAGGAAATGGTATATGGGATATGA 407 Query 437 TCCTATCAATTACCATTATAAGGTATTGTTTTTGTCaaaaaaaTGTTTATTAGATGCATA 496 |||||||||||| || || ||||| |||||||| |||||| ||| ||||||| | | || Sbjct 408 TCCTATCAATTATCAATACAAGGTTTTGTTTTTCTCAAAACAATATTTATTATCTCCCTA 467 Query 497 TAAAGTGGAAGTGTTTACATTCGG-AGAAGAAAGTACATGGAAAACGATCGAGGATGGGA 555 |||| |||||||||||||||| || || || || ||||||||| |||||||| || || Sbjct 468 TAAACTGGAAGTGTTTACATT-GGAAGGTCAAGGTTCATGGAAAATGATCGAGGTTGAGA 526 Query 556 ATATTCACTT-TCCAGAAACCAGAGGAATATGCATCCACGGGGTTTTGTATTACGGTGCT 614 |||||| ||| ||| ||||||||||||||||||| | |||||| |||||||||||||| Sbjct 527 ATATTC-CTTCTCCCTCAACCAGAGGAATATGCATCGATGGGGTTGTGTATTACGGTGCT 585 Query 615 CACACGGGGAATGGACCGAAAATTGTGAGGTTCGATGTGAG-GACGGAAAAGTTTGGTAA 673 || |||| | |||||| || |||| || ||| | ||| | || |||||||||||| | Sbjct 586 CAGACGGCGCATGGACTGAGGCTTGTTAGATTCTACGTG-GCTACTGAAAAGTTTGGTGA 644 Query 674 GTTCATTGAATTTCCGGCT-GAGGCTTGTGGTATTTATGGTGTG-TGTTTGGGTTTCTAT 731 ||||||||| | |||| | | |||| || | |||||| | || ||| |||| || | Sbjct 645 TTTCATTGAAATACCGG-TCGGGGCTAGTAATGTTTATGATATGAACTTT-GGTTACTCT 702 Query 732 ACCCTTGTGGCCTACCAAGGGAAGCTAGCTTTACTTGCTTCAAAAACCATAAGCATATAT 791 | |||||| ||| |||||||| ||||||||||||||| |||||| || ||||| ||| Sbjct 703 AAACTTGTGAACTATCAAGGGAAACTAGCTTTACTTGCTGCAAAAAGTATGAGCATGTAT 762 Query 792 GATTTATGGGTTTTGGAAGATGCCGAGAAACATGCGTGGTCTAAGGTTTCTATCGTCATA 851 ||||||||||||||||||||||||| |||||| | |||||||||||||||||||| || Sbjct 763 GATTTATGGGTTTTGGAAGATGCCGGGAAACAAGAATGGTCTAAGGTTTCTATCGTTTTA 822 Query 852 ACTCCAGAGATGTGTTCGTACGAGCTTATTTGGCCAGGTGTGACGGGTTTTGTTGCTGGT 911 |||| |||||||| |||||| || ||| |||||| ||||| | |||||||||||||||| Sbjct 823 ACTCGAGAGATGTTTTCGTATGATCTTGTTTGGCTAGGTGCGGTGGGTTTTGTTGCTGGT 882 Query 912 AGTGATGAGCTTATAGTTACTGCTCGTGATCAATTTCATGAG-TTTCATCTTGTCTATGT 970 |||||||||||||||||||| |||| ||||| |||| || || ||| ||||||||||||| Sbjct 883 AGTGATGAGCTTATAGTTACAGCTCATGATCGATTTTATCAGATTT-ATCTTGTCTATGT 941 Query 971 TGATCTCAAGACGCAACGTTCGAGGGAAGTTCGGTTCGAAGGAATCAGATCCTCATTTGG 1030 ||||||||||| | ||||||| ||||||||| || ||| ||| ||||||| |||| | | Sbjct 942 TGATCTCAAGATGAAACGTTCAAGGGAAGTTTGGCTCGGAGGGATCAGATGCTCAGATCG 1001 Query 1031 ATCATCGCTGGTGCTTGCTTTCACGGATTACGTTGAAAGTATTGTTTTACTGTAA 1085 |||||| | |||||| |||||||||||||||||||||||||| | ||| ||||| Sbjct 1002 ATCATCTTTAGTGCTTACTTTCACGGATTACGTTGAAAGTATTATGTTATTGTAA 1056 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54316989690 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5