BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920858
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19160.1 | Symbols: | F-box family protein | chr1:6614162-6... 1195 0.0
AT5G52610.1 | Symbols: | F-box and associated interaction doma... 859 0.0
> AT1G19160.1 | Symbols: | F-box family protein | chr1:6614162-6615214
REVERSE LENGTH=1053
Length=1053
Score = 1195 bits (647), Expect = 0.0
Identities = 931/1067 (87%), Gaps = 23/1067 (2%)
Strand=Plus/Plus
Query 24 ATGATTCCTGAAGACCTTTTGGACGAAATTCTCCTAAGGTTACCTGTGAAAAC-CTTGGC 82
|||||||||||||||| ||||| ||||||||||||||| || ||||||||| | | | ||
Sbjct 1 ATGATTCCTGAAGACCCTTTGGTCGAAATTCTCCTAAGATTGCCTGTGAAATCAC-TAGC 59
Query 83 GAGATGTCTATGCGTATCCAAGCATTGCTACTCAATCATCCGCAGTCGACGTTTCATCAA 142
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 60 GAGATTTCTATGCGTATCCAAGCGTTGCTACTCAATCATCCGCAGTCGACATTTCATCAA 119
Query 143 CTTATACCAGTCTCGATCCTCTACTCGTGAGTCACGTGTCATGTTTGCTTTCCGTGATGT 202
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTTATACCAATCTCGAGCCTCTACTCGTGAGTCACGTGTCATGTTTGCTTTCCGTGATAC 179
Query 203 ATACACATTTCTTCGCTGGTATTTCTTCTCCTTACCTCAACCACCTTCTTTAGTTACCAA 262
| |||||||| |||||||| |||||||||| ||| ||||||||||||||| ||||| |
Sbjct 180 AAACACATTTTTTCGCTGGAATTTCTTCTCGTTATCTCAACCACCTTCTTCAGTTA-C-- 236
Query 263 TTCAACATGCTGCATCGATAGTACATCTTTTTGTATGCCTGTTTGCGTCCACGGCTTGAT 322
| | | | ||||||||||| |||| ||||||||||||||||||| | ||||||||
Sbjct 237 --C-A-A---T--ATCGATAGTACTTCTTATTGTATGCCTGTTTGCGTCAATGGCTTGAT 287
Query 323 ATGTGTCGAACACATGTTTCGGCTGTGGATATGCAATCCTGTCACGGGAAAGGTCGCACT 382
||||||||||||||||||||| |||||||||||||||||||||||| |||| || ||||
Sbjct 288 ATGTGTCGAACACATGTTTCGACTGTGGATATGCAATCCTGTCACGAAAAAGATCACACT 347
Query 383 GTTGCCCCA-ACCAGGTCCCCGTGAACAATTCACGACATGGTATATGGGATATGATCCTA 441
|| ||| | | ||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 348 TTTTCCCGATTGC-GGTCCCCGTAAACAATTCACGACATGGTATATGGGATATGATCCAA 406
Query 442 TCAATTACCATTATAAGGTATTGTTTTTGTCaaaaaaaTGTTTATTAGATGCATATAAAG 501
||||||| || || ||||| |||| |||||||| | || |||| ||| | | |||| ||
Sbjct 407 TCAATTATCAATACAAGGTCTTGTATTTGTCAAGAGAACATTTAATAGCTCCTTATATAG 466
Query 502 TGGAAGTGTTTACATTCGGAGAAGAAAGTACATGGAAAACGATCGA-G--GATGGGAATA 558
|||||||||| ||||| ||||| ||| || | |||| || |||||| | |||| ||||
Sbjct 467 TGGAAGTGTTCACATTTGGAGATGAAGGTTCGTGGAGAATGATCGAGGCCGATGAGAAT- 525
Query 559 TT-CACTTTCCAGAAACCAGAGGAATATGCATCCACGGGGTTTTGTATTACGGTGCTCAC 617
|| |||| |||||||||||||||| |||||| |||||||||| ||||||| |||||| |
Sbjct 526 TTCCACTCTCCAGAAACCAGAGGAGTATGCACCCACGGGGTTCTGTATTATGGTGCTTAT 585
Query 618 ACGGGGAATGGACCGAAAATTGTGAGGTTCGATGTGAGGACGGAAAAGTTTGGTAAGTTC 677
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 ACGGGGGATGGAGCGAAAATTGTGAGGTTCGATGTGAGGACGGAAAAGTTTGGTAAGTTC 645
Query 678 ATTGAATTTCCGGCTGAGGCTTGTGGTATTTATGGTGTGTGTTTGGGTTTCTATACCCTT 737
|||||| | ||||| ||||||||| ||||| ||||||| | ||||||| |||||||||||
Sbjct 646 ATTGAAATGCCGGCCGAGGCTTGTAGTATTCATGGTGTCTATTTGGGTCTCTATACCCTT 705
Query 738 GTGGCCTACCAAGGGAAGCTAGCTTTACTTGCTTCAAAAACCATAAGCATATATGATTTA 797
||| ||||||||||||| ||| |||||||||| || || | | ||||| ||||||||||
Sbjct 706 TTGGACTACCAAGGGAAGTTAGGTTTACTTGCTACACAAGCTACAAGCACATATGATTTA 765
Query 798 TGGGTTTTGGAAGATGCCGAGAAACATGCGTGGTCTAAGGTTTCTATCGTCATAACTCCA 857
||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||| |
Sbjct 766 TGGGTTTTGGAAGATGCGGAGAAACATGAGTGGTCTAAGGTTTCTATCTTCATAACTCGA 825
Query 858 GAGATGTGTTCGTACGAGCTTATTTGGCCAGGTGTGACGGGTTTTGTTGCTGGTAGTGAT 917
||||||||| |||| || |||||||||||||||||| |||||||||||||||||||| |
Sbjct 826 GAGATGTGTCCGTATGATCTTATTTGGCCAGGTGTGGTGGGTTTTGTTGCTGGTAGTGGT 885
Query 918 GAGCTTATAGTTACTGCTCGTGATCAATTTCATGAGTTTCATCTTGTCTATGTTGATCTC 977
|||||||||||||||||||||||| | || | |||||||| || ||||||||||||||
Sbjct 886 GAGCTTATAGTTACTGCTCGTGATGAGCTTGGTCAGTTTCATATTCTCTATGTTGATCTC 945
Query 978 AAGACGCAA-CGTTCGAGGGAAGTTCGGTTCGAAGGAATCAGATCCTCATTTGGATCATC 1036
|||| | || ||||||||||||||| ||||||||| ||||| | |||| ||||||||| |
Sbjct 946 AAGAAG-AATCGTTCGAGGGAAGTTTGGTTCGAAGAAATCACACCCTCGTTTGGATCAGC 1004
Query 1037 GCTGGTGCTTGCTTTCACGGATTACGTTGAAAGTATTGTTTTACTGT 1083
|||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1005 TCTGGTGCTTGCTTTCACGGATTACGTTGAAAGTATTGTCTTAATGT 1051
> AT5G52610.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:21346423-21347478 REVERSE LENGTH=1056
Length=1056
Score = 859 bits (465), Expect = 0.0
Identities = 877/1075 (82%), Gaps = 32/1075 (3%)
Strand=Plus/Plus
Query 24 ATGATTCCTGAAGACCTTTTGGACGAAATTCTCCTAAGGTTACCTGTGAAAACCTTGGCG 83
|||||| ||||||||||||||| |||||||||| |||| || ||||||||| || | ||
Sbjct 1 ATGATTTCTGAAGACCTTTTGGTCGAAATTCTCTTAAGATTGCCTGTGAAACCCCTAGCT 60
Query 84 AGATGTCTATGCGTATCCAAGCATTGCTACTCAATCATCCGCAGTCGACGTTTCATCAAC 143
||||| ||||| || | ||||| ||| | ||||||||||||||||| ||||||||||
Sbjct 61 AGATGCCTATGTGTGTGCAAGCTTTGGGCCACAATCATCCGCAGTCGATATTTCATCAAC 120
Query 144 TTATACCAGTCTCGATCCTCTACTCGTGAGTCACGTGTCATGTTTGCTTTCCGTGATGTA 203
|||||||| |||||||||||||||||| || || ||||||||||||||| |||||| ||
Sbjct 121 TTATACCAATCTCGATCCTCTACTCGTCAGCCATATGTCATGTTTGCTTTACGTGATATA 180
Query 204 TACACAT-TTCTTCGCTGGTATTTCTTCTCCTTACCTCAACC-ACCTTCTTTAGTTACCA 261
| ||||| || ||| ||| ||||||||| | | | || || ||||||||| |||||||
Sbjct 181 TTCACATCTT-GTCGTTGGCATTTCTTCT-CGT-CATC--CCAACCTTCTTTGGTTACCA 235
Query 262 ATTCAACATGCTGCATCGATAGTACA-TCTTTTTGTATGCCTGTTTGCGTCCACGGCTTG 320
| | |||||| || | | | || | |||| | || ||||| ||| ||| | ||||||
Sbjct 236 AGGCGACATGCAGC-GCCA-A-TA-ATTCTTCTCATACGCCTGATTGTGTCAATGGCTTG 291
Query 321 ATATGTGTCGAACACATGTTTCGGCTGTGGATATGCAATCCTGTCACG-GGAAAGGTCGC 379
|||||||||||| |||||| || |||||||||| |||||||| |||| | || ||| |
Sbjct 292 ATATGTGTCGAATACATGTCTCAACTGTGGATATCCAATCCTGCCACGCGTAAGGGT-GT 350
Query 380 ACT-GTTGCCCCAA-CCAGGTCCCCGTGAACAA-TTCACGACATGGTATATGGGATATGA 436
||| | |||||||| || | ||| | | || || |||| || ||||||||||||||||||
Sbjct 351 ACTCG-TGCCCCAATCC-GCTCCACATCAA-AAGTTCAGGAAATGGTATATGGGATATGA 407
Query 437 TCCTATCAATTACCATTATAAGGTATTGTTTTTGTCaaaaaaaTGTTTATTAGATGCATA 496
|||||||||||| || || ||||| |||||||| |||||| ||| ||||||| | | ||
Sbjct 408 TCCTATCAATTATCAATACAAGGTTTTGTTTTTCTCAAAACAATATTTATTATCTCCCTA 467
Query 497 TAAAGTGGAAGTGTTTACATTCGG-AGAAGAAAGTACATGGAAAACGATCGAGGATGGGA 555
|||| |||||||||||||||| || || || || ||||||||| |||||||| || ||
Sbjct 468 TAAACTGGAAGTGTTTACATT-GGAAGGTCAAGGTTCATGGAAAATGATCGAGGTTGAGA 526
Query 556 ATATTCACTT-TCCAGAAACCAGAGGAATATGCATCCACGGGGTTTTGTATTACGGTGCT 614
|||||| ||| ||| ||||||||||||||||||| | |||||| ||||||||||||||
Sbjct 527 ATATTC-CTTCTCCCTCAACCAGAGGAATATGCATCGATGGGGTTGTGTATTACGGTGCT 585
Query 615 CACACGGGGAATGGACCGAAAATTGTGAGGTTCGATGTGAG-GACGGAAAAGTTTGGTAA 673
|| |||| | |||||| || |||| || ||| | ||| | || |||||||||||| |
Sbjct 586 CAGACGGCGCATGGACTGAGGCTTGTTAGATTCTACGTG-GCTACTGAAAAGTTTGGTGA 644
Query 674 GTTCATTGAATTTCCGGCT-GAGGCTTGTGGTATTTATGGTGTG-TGTTTGGGTTTCTAT 731
||||||||| | |||| | | |||| || | |||||| | || ||| |||| || |
Sbjct 645 TTTCATTGAAATACCGG-TCGGGGCTAGTAATGTTTATGATATGAACTTT-GGTTACTCT 702
Query 732 ACCCTTGTGGCCTACCAAGGGAAGCTAGCTTTACTTGCTTCAAAAACCATAAGCATATAT 791
| |||||| ||| |||||||| ||||||||||||||| |||||| || ||||| |||
Sbjct 703 AAACTTGTGAACTATCAAGGGAAACTAGCTTTACTTGCTGCAAAAAGTATGAGCATGTAT 762
Query 792 GATTTATGGGTTTTGGAAGATGCCGAGAAACATGCGTGGTCTAAGGTTTCTATCGTCATA 851
||||||||||||||||||||||||| |||||| | |||||||||||||||||||| ||
Sbjct 763 GATTTATGGGTTTTGGAAGATGCCGGGAAACAAGAATGGTCTAAGGTTTCTATCGTTTTA 822
Query 852 ACTCCAGAGATGTGTTCGTACGAGCTTATTTGGCCAGGTGTGACGGGTTTTGTTGCTGGT 911
|||| |||||||| |||||| || ||| |||||| ||||| | ||||||||||||||||
Sbjct 823 ACTCGAGAGATGTTTTCGTATGATCTTGTTTGGCTAGGTGCGGTGGGTTTTGTTGCTGGT 882
Query 912 AGTGATGAGCTTATAGTTACTGCTCGTGATCAATTTCATGAG-TTTCATCTTGTCTATGT 970
|||||||||||||||||||| |||| ||||| |||| || || ||| |||||||||||||
Sbjct 883 AGTGATGAGCTTATAGTTACAGCTCATGATCGATTTTATCAGATTT-ATCTTGTCTATGT 941
Query 971 TGATCTCAAGACGCAACGTTCGAGGGAAGTTCGGTTCGAAGGAATCAGATCCTCATTTGG 1030
||||||||||| | ||||||| ||||||||| || ||| ||| ||||||| |||| | |
Sbjct 942 TGATCTCAAGATGAAACGTTCAAGGGAAGTTTGGCTCGGAGGGATCAGATGCTCAGATCG 1001
Query 1031 ATCATCGCTGGTGCTTGCTTTCACGGATTACGTTGAAAGTATTGTTTTACTGTAA 1085
|||||| | |||||| |||||||||||||||||||||||||| | ||| |||||
Sbjct 1002 ATCATCTTTAGTGCTTACTTTCACGGATTACGTTGAAAGTATTATGTTATTGTAA 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316989690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5