BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920861
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19190.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1157 0.0
> AT1G19190.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:6623876-6624977 FORWARD LENGTH=1102
Length=1102
Score = 1157 bits (626), Expect = 0.0
Identities = 783/860 (91%), Gaps = 6/860 (1%)
Strand=Plus/Plus
Query 21 ATGGATTCCGAAATCGCATTCGACAATTCTCCGAGGTTTAGGATCTTCAAGAACGGCCGC 80
|||||||||||||||||||||||| |||||||||||||| | || ||||||||||| ||
Sbjct 1 ATGGATTCCGAAATCGCATTCGACTATTCTCCGAGGTTTCGTATATTCAAGAACGGTGGC 60
Query 81 ATAGAACGCCTCGTACCGGAAACTTTCATCCCACCGTCGCTAAAACCCGAAAGCGGCGTC 140
|| |||||||||||||| ||||| ||| |||||||||| ||||| ||||||| |||||||
Sbjct 61 ATCGAACGCCTCGTACCCGAAACATTCGTCCCACCGTCACTAAATCCCGAAAACGGCGTC 120
Query 141 GTATCTAAAGACGCAGTCTATTCACCGGAGAAAAACCTCTCTCTCCGCATTTACCTCCCT 200
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTATCTAAAGATGCCGTCTATTCACCGGAGAAAAACCTCTCTCTCCGCATTTACCTCCCT 180
Query 201 CAGAAA-TCCGTCGATGACACCGGCGCTAGGAAAATCCCACTACTCGTCTACTTTCACGG 259
|| ||| |||||| |||| ||||||| | ||||||||||||||||||||||||||| ||
Sbjct 181 CA-AAATTCCGTCTATGAAACCGGCGAGAAGAAAATCCCACTACTCGTCTACTTTCATGG 239
Query 260 CGGAGCTTTTATCATGGAAACAGCTTTCTCTACAATTTACCACACTTTTCTCACATCGGC 319
||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 240 CGGAGGATTCATCATGGAAACAGCTTTCTCTCCAATTTACCACACTTTTCTCACATCGGC 299
Query 320 TGTTTCAGCCGCCGATTGCATCGCCGTCTCAGTAG-ATCACCGGCGTGCACCTGAGCATC 378
||||||||| ||||||||||||| |||||||||| || |||| ||||||||||||||||
Sbjct 300 AGTTTCAGCCACCGATTGCATCGCTGTCTCAGTAGAAT-ACCGTCGTGCACCTGAGCATC 358
Query 379 CGATTCCAACCGCGTACGAAGATTCATGGCACGCGATTCAATGGATCTTCACTCATATCG 438
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 359 CGATTCCAACCTTGTACGAAGATTCATGGGACGCGATTCAATGGATCTTCACTCATATCA 418
Query 439 CCGGATCTGGTCCTGAAGACCGGCTGAACAAACACGCTGATTTCAGTAAAGTATACCTCG 498
| |||||||||||||||| |||| ||||||||||| |||||||||||||| | ||||
Sbjct 419 CAAGATCTGGTCCTGAAGATTGGCTAAACAAACACGCCGATTTCAGTAAAGTCTTTCTCG 478
Query 499 CCGGAGACAGCGCCGGAGCTAACATCGCTCATCACATGGCGATTAGAGCAGAGAAAGAGA 558
||||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||||||
Sbjct 479 CCGGAGATAGCGCCGGAGCTAACATCGCGCATCACATGGCGATTAGAGTAGACAAAGAGA 538
Query 559 AACTCTCGCCGGAAAATTTCAAAATCTCGGGGATGATTTTGTTTCATCCGTATTTCTTGT 618
||||| | ||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 539 AACTCCCCCCGGAAAATTTCAAAATATCGGGGATGATTCTGTTTCATCCGTATTTCTTGT 598
Query 619 CAAAAGCTTTGATTGAGGAGATGGAAGTGGGAGCGATGAGATATTATGAGAGGCTTTGCA 678
|||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| |
Sbjct 599 CAAAAGCTTTGATTGAGGAGATGGAAGTGGAAGCGATGAGATATTACGAAAGGCTTTGGA 658
Query 679 GGATCGCGACTCCTGGTAGTGAAAACGGTGTGGAGGATCCGTGGATTAATGTGGTCGGGT 738
| ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 659 GAATCGCGAGTCCTGATAGTGGAAACGGTGTGGAGGATCCGTGGATTAATGTGGTCGGGT 718
Query 739 CGGATCTATCTG-AGTTGGGTTGCGGGCGGGTTTTGGTGATGGTGGCGGGAAATGATGTG 797
|||||||| | | | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 719 CGGATCTAACCGGA-TTGGGTTGTAGGCGGGTTTTGGTGATGGTGGCGGGAAATGATGTG 777
Query 798 TTGGCGAGGGGAGGTTGGAGTTACGCGGTGGATCTGAAGAAGTGTGGATGGGTAGGGAAA 857
||||| ||||||||||||||||||| || ||| ||| ||||| |||||||| ||||||||
Sbjct 778 TTGGCTAGGGGAGGTTGGAGTTACGTGGCGGAGCTGGAGAAGAGTGGATGGATAGGGAAA 837
Query 858 GTGGAAGTGGTGGAGACTAA 877
||| ||||| ||||||||||
Sbjct 838 GTGAAAGTGATGGAGACTAA 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48224781120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5