BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920871

Length=869
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G23270.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   387    1e-106


> AT1G23270.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G31460.1); 
Has 901 Blast hits to 142 proteins in 59 species: Archae - 
0; Bacteria - 69; Metazoa - 176; Fungi - 29; Plants - 28; Viruses 
- 0; Other Eukaryotes - 599 (source: NCBI BLink). | chr1:8259602-8260144 
REVERSE LENGTH=543
Length=543

 Score =  387 bits (209),  Expect = 1e-106
 Identities = 269/297 (91%), Gaps = 8/297 (3%)
 Strand=Plus/Plus

Query  30   ATGCCAA-TTTTTTATACTGGTAAAGACGATTTAGCTGTGG-CGAATCTGCTTTCACAAG  87
            ||| ||| |||||| |||||||||||| |||| ||||||||  ||| || ||||||||||
Sbjct  1    ATGTCAAGTTTTTT-TACTGGTAAAGATGATTCAGCTGTGGAGGAA-CTTCTTTCACAAG  58

Query  88   CTAAAGATCACTACGTTCTTGAACAAGTCGCCAAACTCAACTGCTCTGGCTTCACCGACG  147
            |||||||||| |||||||||||||||||||||||| ||||||| || |||||||||||||
Sbjct  59   CTAAAGATCAATACGTTCTTGAACAAGTCGCCAAAATCAACTGTTCAGGCTTCACCGACG  118

Query  148  ACTCTGCTCTTCCCTCTAATCACGAAACCCGTTTCCGTCGTCTCAAATCTCTTCCGGTTT  207
            || ||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||
Sbjct  119  ACACTGCTCTTCCCACTAATCCCGAAACCCGTTTACGTCGTCTCAAATCTCTTCCGGTTT  178

Query  208  CTCGA-CCTGACTCTGTTTCGTCTTCCTCGAAGAAACTTCTCTCTCAGTCCAAGAGCATG  266
            ||||| || ||||| |||||||||||| ||||||||||||||||||| ||||| ||||||
Sbjct  179  CTCGAACC-GACTCGGTTTCGTCTTCCCCGAAGAAACTTCTCTCTCACTCCAATAGCATG  237

Query  267  GCAAGTTACCCTAAGAAGAAG-AGTCGTGGAAACGTTTCCTCTGTTTCTTCTTTTTC  322
            |||||| ||||| |||||||| | |||||||||||||||||| ||||||||||||||
Sbjct  238  GCAAGTCACCCTGAGAAGAAGTA-TCGTGGAAACGTTTCCTCAGTTTCTTCTTTTTC  293



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42397620068


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5