BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920875
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19310.1 | Symbols: | RING/U-box superfamily protein | chr1... 1127 0.0
> AT1G19310.1 | Symbols: | RING/U-box superfamily protein | chr1:6676234-6677673
REVERSE LENGTH=1045
Length=1045
Score = 1127 bits (610), Expect = 0.0
Identities = 682/717 (95%), Gaps = 4/717 (1%)
Strand=Plus/Plus
Query 2 CAGAGGTTTTTG-GGTGAATCATGTCTGATGTTCCTTCTTGTTCTAGCGGCAATGATACA 60
|||||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 155 CAGAGG-TTTTGTGGTGAATCATGTCTGATGTCCCTTCTTGTTCTAGCGGTAATGATACA 213
Query 61 AACAGCAATGATTCGAGTAACTTTGAATGTAACATCTGCTTAGACTTGGCTCAAGATCCT 120
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 214 AACAACAATGATTCGAGTAACTTCGAATGTAACATCTGCTTAGACTTGGCTCAAGATCCT 273
Query 121 ATTGTCACTCTCTGTGGTCACTTGTTCTGTTGGCCTTGCTTATACAAATGGCTCCATCTC 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 274 ATTGTCACTCTCTGTGGTCACTTGTTCTGTTGGCCTTGTTTATACAAATGGCTCCATCTC 333
Query 181 CATTCTCAATCTAAGGAATGTCCGGTTTGCAAAGCCGTGATCGAAGAAGACAGATTGGTT 240
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 334 CATTCTCAATCTAAGGACTGTCCTGTTTGCAAAGCCGTGATCGAAGAAGACAGATTGGTT 393
Query 241 CCTTTGTACGGTAGAGGTAAATCGTCTGCCGACCCTCGATCCAAGTCCATTCCTGGACTC 300
||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||
Sbjct 394 CCTTTGTACGGTAGAGGTAAATCGTCTGCTGACCCTCGGTCCAAGTCCATTCCGGGTCTC 453
Query 301 GAAGTGCCTAACCGTCCATCGGGACAGAGACCCGAAACTGCACAACCTCCTGATCCTAAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 GAAGTGCCTAACCGTCCATCGGGACAGAGACCCGAAACTGCACAACCTCCTGATCCTAAC 513
Query 361 CATGGTTTTGCTCATCATCATGGGTTTGGTGGGTTCATGGGAGGTTTTGCTGCTCCGATG 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 514 CATGGTTTTGCTCATCATCATGGGTTTGGAGGGTTCATGGGAGGTTTTGCTGCTCCGATG 573
Query 421 GCGAGTGCCCGGTTTGGGAATGTTACATTGTCTGCAGCGTTTGGCGGTTTGATTCCTTCG 480
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 GCGAGTGCGCGGTTCGGGAATGTTACATTGTCTGCAGCGTTTGGCGGTTTGATTCCTTCT 633
Query 481 TTGTTCAACCTCCATTTCCATGGATTCCCTGATGCAGCCATGTATGGAGCTGCTGCTTCT 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 634 TTGTTCAACCTCCATTTCCATGGTTTCCCTGATGCAGCCATGTATGGAGCTGCTGCTTCT 693
Query 541 GGCGGCTTCCCTCACGGTTTCTCAAATCC-TTTCCATGGAGGACACTCACATATGCATAG 599
||||||||||||||||||||||| ||||| |||| ||||||||||||| |||||||||||
Sbjct 694 GGCGGCTTCCCTCACGGTTTCTCGAATCCGTTTC-ATGGAGGACACTCGCATATGCATAG 752
Query 600 TTACCAGCGGCACGCCGGACGACAAGGACAACAAGACAATCACTTGAAGCTATTGTCACT 659
||||||||||||| | || |||||||||||||||||| ||||||||| | |||||| |||
Sbjct 753 TTACCAGCGGCACACGGGTCGACAAGGACAACAAGACCATCACTTGAGGATATTGTTACT 812
Query 660 TATTGTTTTTGTCGTCGTTGTGTTATCCCTCTTCTTGAGCTAGTGAGGAAATCAATT 716
|||||||| ||||| |||||||| || ||||||||||||||||||||||||| |||
Sbjct 813 CATTGTTTTCGTCGTTGTTGTGTTTTCTCTCTTCTTGAGCTAGTGAGGAAATCGATT 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35063434606
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5