BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920881
Length=1869
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19370.1 | Symbols: | unknown protein; LOCATED IN: endoplas... 2835 0.0
AT1G75140.1 | Symbols: | unknown protein; LOCATED IN: endoplas... 891 0.0
> AT1G19370.1 | Symbols: | unknown protein; LOCATED IN: endoplasmic
reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G75140.1); Has 45 Blast
hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr1:6692764-6694934 REVERSE
LENGTH=2171
Length=2171
Score = 2835 bits (1535), Expect = 0.0
Identities = 1768/1878 (94%), Gaps = 26/1878 (1%)
Strand=Plus/Plus
Query 1 CTTAAACTTTT-CCATTACGT-TAATGGCGGATCCTCTAAACGGCAAGTCCTTCTTTTTC 58
||| ||||||| ||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 191 CTTTAACTTTTCCCATTAC-TGTAATGGCGGATCCTCTAAACGGCAAGTCCTTCTTTATC 249
Query 59 TGCTTCTCCCTCATAACCTCCTTTACTCTACTTTTCATTTCGCCGTCGTACGCCAACGAG 118
|| |||||||| || |||||| ||||| |||||||||||||||| ||| |||| ||||
Sbjct 250 TGTTTCTCCCTTTTATTCTCCTTCACTCTGCTTTTCATTTCGCCGTTGTATGCCACCGAG 309
Query 119 TCTCCGGTTATCGAAGATGTTTCTACCGATGTAGCTGTCTCTGTTAGCGAACCCGATCGA 178
|||||||||||||||||||||||||||||||| ||||| |||||||||||| || |||||
Sbjct 310 TCTCCGGTTATCGAAGATGTTTCTACCGATGTTGCTGTGTCTGTTAGCGAAACCAATCGA 369
Query 179 GAAGCTGTTCTTTTGCATAATCTAGAAGACCTCGTTAAGAATTTGACAGATTTAGTCGCT 238
||||||||||| ||||||||| |||| || |||||||||||| |||| || |||||||||
Sbjct 370 GAAGCTGTTCTATTGCATAATTTAGAGGAACTCGTTAAGAATCTGACGGAATTAGTCGCT 429
Query 239 AATCTAGATGCTAAGTTATCTGAAACTTTATCAAAGGAGAAGAACGAGATCACTAAATCA 298
|||||||||||||||||||||| |||| || |||||||||||||||||| | |||
Sbjct 430 AATCTAGATGCTAAGTTATCTGCAACTCCATTAAAGGAGAAGAACGAGAT--C----TCA 483
Query 299 GTTGATGATGATATCggagaagagaaggagagaggaggaggaggaagagCTAAGGCGTTT 358
||||||||||| |||||||||||||| ||||| ||||| | | | ||||||||||||
Sbjct 484 GTTGATGATGACATCGGAGAAGAGAA--AGAGA-GAGGA--A-G--G-GCTAAGGCGTTT 534
Query 359 TCAGTGACTAAATACAGTCCGTTTTGGTCGGAGAGGTTTCAGTTTACATCAGCTGTGAAA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TCAGTGACTAAATACAGTCCGTTTTGGTCGGAGAGGTTTCAGTTTACATCAGCTGTGAAA 594
Query 419 CTCAATTCCGATGCGACTTGTATCAATGTGTTGCCGTTTAAAGATTTCGAAGGTTCGAGC 478
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 595 CTCAATTCCGATGCGACTTGTATCAATGTGTTGCCGTTTAGAGATTTCGAAGGTTCAAGC 654
Query 479 AAGTACTTTGCAATTGGTGATTTTAAAGGTAGAGTTTATGTGTTCTTGAGAAATGGTGAT 538
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 655 AAGTACTTTGCAATTGGTGATTCTAAAGGTAGAGTTTATGTGTTCTTGAGAAATGGTGAT 714
Query 539 GTTTTGATTGAGTTTTTCACCACTGTTGATTCTCCGGTTACTGCTATGGTTTCGTATTTA 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 715 GTTTTGATTGAGTTTTTCACCACTGTTGATTCTCCGGTTACTGCTATGGTTTCGTATTCA 774
Query 599 TCGGTGTTTAAGAACTCGAGTTTCGTGGTTACGGGTCATCAGAATGGTGCGGTTTTGTTG 658
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 775 TCTGTGTTTAAGAACTCGAGTTTCGTGGTTACGGGTCATCAGAACGGTGCGGTGTTGTTG 834
Query 659 CATCGGATTCACGAGGGATCGAATGGCGAAGATTGGAACTCGAATTCGGTTTCGATGGAA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 835 CATCGGATTCACGAGGGATCGAATGGCGAAGATTGGAACTCGAATTCGGTTTCTATGGAA 894
Query 719 CATGTTGGGAAGTTTGATGTGGATGATTCAGCTGATCCTGTGACTTTGTTGGAAGTGCAT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CATGTTGGGAAGTTTGATGTGGATGATTCAGCTGATCCTGTGACTTTGTTGGAAGTGCAT 954
Query 779 CATGTGGGTCGGGTTAGGTATATATTGATGACGGATTTAAGTGGGAAGCTCACGGTTTTG 838
||||||||||| ||||||||||||||| ||| |||||||| |||||||||||||||||
Sbjct 955 CATGTGGGTCGTGTTAGGTATATATTGGCGACTGATTTAAGCGGGAAGCTCACGGTTTTA 1014
Query 839 ACTGAGAACAGAACGGTTTATGGGTCGGTTATTCCATCGAGTAGACCGCTTGTGTTCTTG 898
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1015 ACTGAGAACAGGACGGTTTATGGGTCGGTTATTCCATCGAGTAGACCGCTCGTGTTCTTG 1074
Query 899 AAGCAGAGATTGTTGTTTCTTACTGAGTCTGGTGCTGGTTCCTTGGACTTAAGAAGCATG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 AAGCAGAGATTGTTGTTTCTTACTGAGTCTGGTGCTGGTTCCTTGGACTTAAGAAGCATG 1134
Query 959 AAGATAAGAGAAACTGAGTGTGAAGGACTAAACCACTCGCTTGCGAGAACTTATGTTTTT 1018
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1135 AAGATAAGAGAAACTGAGTGTGAAGGACTGAACCATTCGCTTGCGAGAACTTATGTTTTT 1194
Query 1019 GATGCTGCGGAACGGTCTAAAGCTTATGGATTCACATCCGAGGGCGAGATCATTCACGTA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GATGCTGCGGAACGGTCTAAAGCTTATGGATTCACATCCGAGGGCGAGATCATTCACGTA 1254
Query 1079 TTGCTTCACGGAGATATAATGAACTTCAAATGTAGAGTCAGATCCAAGAAAAAGTTCCAA 1138
|||||||| |||||||||||||||||||||||||| || ||||||||||| ||||| |||
Sbjct 1255 TTGCTTCATGGAGATATAATGAACTTCAAATGTAGGGTTAGATCCAAGAAGAAGTTTCAA 1314
Query 1139 ATGGAGGAGCCAGTAGCTTTACAATCAATTAAAGGCTATCTTCTTGTTATCAATGAAGAA 1198
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 1315 ATGGAGGAGCCAGTAGCTTTACAATCAATCAAAGGCTATCTTCTAGTTATCAACGAAGAA 1374
Query 1199 AAGGTTTTCGCTTTCAATGTATCGACTCAGCATTATGTTCGTACTGCTGGTCCTCGGCTT 1258
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1375 AAGGTTTTCGCTTTCAATGTATCGACTCAGCATTATGTTCGTACTGCGGGTCCTCGGCTT 1434
Query 1259 TTGTTCTCTGCGGGTTTAGAAGAGATCAGATCCGCGTTCTTGAGTCATCGTGAATCATCT 1318
|||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1435 TTGTTCTCAGCGGGATTAGAAGAGATCAGATCCGCGTTCTTGAGCCATCGCGAATCATCT 1494
Query 1319 TCAAG-A--ACCGCAGTAGTAAAGACGAGGCCTTTGATAGCTAGCGACCGGGAAAACCTT 1375
||| | | ||| ||||||||||||| ||||| || |||||||||||| |||||||||||
Sbjct 1495 TCACGAACCACCACAGTAGTAAAGACTAGGCCGTTAATAGCTAGCGACAGGGAAAACCTT 1554
Query 1376 CTTGTGATTGGTTTAGAAAACGGATATTTCGCTGTTTACAAATCGAAGCTTCCAACTCTC 1435
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1555 CTTGTGATCGGTTTAGAAAACGGATATTTCGCTGTTTACAAATCGAAGCTGCCAACTCTC 1614
Query 1436 AAAGGAGACTTCAATACAATGCTTTGGAGCAGTCCTGTGTTCTTCTTCATACTATTTCTA 1495
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 AAAGGAGACTTCAACACAATGCTTTGGAGCAGTCCTGTGTTCTTCTTCATACTATTTCTA 1674
Query 1496 TTCGGGGCTTGGCATTTCTTTGCCAAGAAGAAAGAATCGCTCACTGCATGGGGACCAGAT 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 TTCGGGGCTTGGCATTTCTTTGCCAAGAAGAAAGAATCGCTCACTGCATGGGGACCAGAT 1734
Query 1556 GATCCTTTTACTCCGACTG-CGTCACAAAACAGTTCGGCGACAGCGCCGACATTTACTGA 1614
||||||||||| ||||| | || ||||||| |||||||||| || ||| |||||||||||
Sbjct 1735 GATCCTTTTACCCCGACCGGCG-CACAAAATAGTTCGGCGAAAGAGCCAACATTTACTGA 1793
Query 1615 ACCTTCAAGAAGAAACGATGACCTCATGGATCTACGGAGAAGGTACGCTGGTGGCACGTA 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1794 ACCTTCAAGAAGAAACGATGACCTCATGGATCTACGGAGAAGGTACGCTGGTGGCTCATA 1853
Query 1675 CCGGTCAGTTGGAGCTAACGACCCGAGTTCAAGAGCCCCGGTTGATGGAAACTATAGAAC 1734
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1854 CCGGTCAGTTGGAGCTAACGACCCGAGTTCAAGAGCTCCGGTTGATGGAAACTATAGAAC 1913
Query 1735 AACCGCACAGGATCATAACAACTATCGCAGCGG---CTCGGGTCTTGATTCAAACGGTTT 1791
||||||||||||||||||||| |||||| | || ||||||||||||||||||||| ||
Sbjct 1914 AACCGCACAGGATCATAACAATTATCGCGGTGGTGGCTCGGGTCTTGATTCAAACGGGTT 1973
Query 1792 TGGTAATAGAAGAGACCATTTGTTTGGTAACAACAAAGTTTTGGACAACGAAAGTTAGAA 1851
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1974 TGGTAATAGAAGAGATCATTTGTTTGGTAACAACAAAGTTTTGGATAACGAAAGTTAGAA 2033
Query 1852 TCTTTGGATTACTTACAA 1869
|||||||||||||| |||
Sbjct 2034 TCTTTGGATTACTTGCAA 2051
> AT1G75140.1 | Symbols: | unknown protein; LOCATED IN: endoplasmic
reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G19370.1); Has 51 Blast
hits to 49 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes
- 5 (source: NCBI BLink). | chr1:28202053-28204279
REVERSE LENGTH=2227
Length=2227
Score = 891 bits (482), Expect = 0.0
Identities = 1020/1269 (80%), Gaps = 79/1269 (6%)
Strand=Plus/Plus
Query 342 gaagagCTAAGGCGTTTTCAGTGACTAAA-TACAGTCCGTTT-TGGTCGGAGAGGTTTC- 398
||| ||||||||| ||||| || || ||| || ||||| ||| ||||| |||| | |||
Sbjct 563 GAA-AGCTAAGGCTTTTTCCGTTAC-AAAGTATAGTCC-TTTCTGGTCTGAGA-GATTCG 618
Query 399 AGTTTACATCAGCTGTGAAACTCA-ATTCCGATGCGACTTGTATCAATGTGTTGCCGTTT 457
| || ||||||||||||||| | | | || || |||||||||||||| ||||| ||||||
Sbjct 619 AATTCACATCAGCTGTGAAA-TTAGACTCTGAAGCGACTTGTATCAACGTGTTACCGTTT 677
Query 458 AAAGATTTCGAAGGTTCGAGCAAGTACTTT-GCAATTGGTGATTTTAA-AGGTAGAGTTT 515
|||| |||||||| |||||||| ||| ||| |||| || || || ||||| ||||
Sbjct 678 CGAGATCACGAAGGTTTAAGCAAGTA-TTTCGCAGTTGGAGA-TTCAAGTGGTAGGGTTT 735
Query 516 ATGTGTTCTTGAGAAATGGTGATGTTTTGATTGAGTTTTTCACCA-CTGTTGATTCTCCG 574
||| |||||||||||||| ||||||||| ||||||||||||||| ||| ||||| ||
Sbjct 736 TTGTCTTCTTGAGAAATGGCGATGTTTTGGTTGAGTTTTTCACCACCTG-CGATTCACCA 794
Query 575 GTTACTGCTATGGTTTCGTATTTATCGGTGTTTAAGAACT-CGAG-TTTCGTGGTTACGG 632
| || || ||||| || || | || |||| |||||| | ||| ||| ||||| ||||
Sbjct 795 ATCACGGCAATGGTGTCTTACATGTCTGTGTATAAGAA-TGAGAGCTTT-GTGGTGACGG 852
Query 633 GTCATCAGAA-TGGTG-CGGTTTTGTTGCATCGGA-TTC-ACGAGGGATCGAAT-GGCGA 687
| || || || || | | | ||||||||| || | | | ||||| ||| || || ||
Sbjct 853 GACACCA-AAGCGGAGTC-ATCTTGTTGCAT-AGACTCCGA-GAGGGCTCG-ATCGGGGA 907
Query 688 AGATTGGAACTCGAATT-CGGTTTCGATGGAACATGTTGGGAAGTTTGAT-G--TGGATG 743
||||| | ||||| || | | ||||||| ||||||| ||||||||| | ||| |
Sbjct 908 AGATT-----T-GAATTCCGCTGT-GATGGAAAATGTTGGCAAGTTTGATGGCACGGAGG 960
Query 744 ATTCAGCTGAT-CCTGTGACTTTGTTGGAAGTGCATCATGTGGGTCGGGTTAGGTATATA 802
| | | | | | |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 961 A-T--GGT-TTGCAAGTGACTCTATTGGAAGTGCATCATGTGGGTCGGGTTAGGTATATA 1016
Query 803 TTGATGACGGAT-TTAAGTGGGAAGCTCACGGTTTTGACTGAGAACAGAACGGTTTATGG 861
||| ||| ||| ||| | || ||||| |||||||| |||||||||||||||||||||||
Sbjct 1017 TTGGCGACAGATCTTA-GCGGAAAGCTTACGGTTTTCACTGAGAACAGAACGGTTTATGG 1075
Query 862 GTCGGTTATTCCATCGAGTAGACCGCTTGTGTTCTTGAAGCAGAGA-TTGTTGTTTCTTA 920
|| |||| ||| ||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 1076 CTCTGTTAGCCCAACGAGTAGACCGCTTGTGTTCTTGAAGCAGAGGCTT-TTGTTTCTCA 1134
Query 921 CTGAGTCTGGTGCTGGTTCCTTGGACTTAAGAAGCATGAAGATAAGAGAAACTGAGTGTG 980
||||| ||||||||||||| ||||||||||||||||||||||| || ||| |||||||||
Sbjct 1135 CTGAGACTGGTGCTGGTTCATTGGACTTAAGAAGCATGAAGATCAGGGAATCTGAGTGTG 1194
Query 981 AAGGACTAAACCACTCGCTTGCGAGAACTTATGTTTTTGATGC-TGCGGAACGGTCTAAA 1039
|||| || ||||| || || || |||| ||||||||||||||| | || ||||| |||||
Sbjct 1195 AAGGTCTTAACCATTCTCTAGCAAGAAGTTATGTTTTTGATGCGTCCG-AACGGGCTAAA 1253
Query 1040 GCTTATGGATTCACATCCGAGGGCGAGATCATTCACGTATTGCTTCACGGAGATATAATG 1099
|||||||||||||||||||| ||||| ||||||||||| ||||||| |||||| || |||
Sbjct 1254 GCTTATGGATTCACATCCGAAGGCGAAATCATTCACGTGTTGCTTCTCGGAGACATTATG 1313
Query 1100 AACTTCAAATGTAGAGTCAGATCCAAGAAAAAGTTCCAAATGGAGGAGCCAGTAGCTTTA 1159
||||||||||||||||| ||||| ||||| ||| | |||||||||||||| ||||| |||
Sbjct 1314 AACTTCAAATGTAGAGTGAGATCAAAGAAGAAGGTACAAATGGAGGAGCCTGTAGCGTTA 1373
Query 1160 CAATCAATTAAAGGCTATCTTCTTGTTA-TCAATGAAGA-AAAGGT-TTTCGCTTT-CAA 1215
||| | || ||||||||||| ||| | | |||| |||| |||| | ||| | | | |||
Sbjct 1374 CAAGCCATCAAAGGCTATCTACTTAT-AGTCAACCAAGAGAAAG-TCTTT-G-TATACAA 1429
Query 1216 TGTATCGACTCAGCATTATGTTCGTACTGCTGGTCCTCGGCTT-TTGTTCTCTGCGGGTT 1274
|||||||||||| || || || || || | |||||||||||| || ||| | || | |
Sbjct 1430 TGTATCGACTCAACACTACGTCCGAACCACGGGTCCTCGGCTTCTTTTTC-CGGCTGCAT 1488
Query 1275 TAGAAGAGATCAGATCCGCGTTCTTGAGTCATCGTGAATCATCTT---C-A-AGA--ACC 1327
||||||| ||||| || |||||||||| ||||| |||||| || | | ||| |||
Sbjct 1489 TAGAAGATATCAGGTCAACGTTCTTGAGCCATCGAGAATCAACTAAAACCACAGATCACC 1548
Query 1328 -GCAG-TAGTAAAGACGAGGCCTTTGATAGCTAGCGACCGGGAAAACCTTCTTGTGATTG 1385
| || ||| |||| | ||||| ||||| |||||||| ||||| || |||||||| |
Sbjct 1549 AGAAGCTAGAAAAGGTAACTCCTTTAATAGCAAGCGACCGCGAAAAGCTGCTTGTGATGG 1608
Query 1386 GTTTAGAAAACGGATATTTCGCTGTTTACAAATCGAAGCTTCCAACTCTC-AAAGGAGAC 1444
|||||| | ||||||| | ||| |||||||| |||||||||| |||| |||| |||
Sbjct 1609 GTTTAGGAGACGGATACGTAGCTACATACAAATCAAAGCTTCCAA-TCTCCAAAGCAGAA 1667
Query 1445 TTCAATACAATGCTTTGGAGCAGTCCTGTGTTCTTCTTCATACTATTTCT-ATTCGGGGC 1503
||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||| ||
Sbjct 1668 TTCAACACAATGCTTTGGAGCAGTCCTGTCTTCTTCTTCATACT-TTTCTTATTCGGCGC 1726
Query 1504 TTGGCATTTCTTTGC-C-AAGAAGAAAGAATCGCTCACTGCATGGGGACCAGATGATCCT 1561
||||||||| ||| | | |||||||||||||| ||||| || |||||||| || ||||||
Sbjct 1727 TTGGCATTT-TTT-CTCTAAGAAGAAAGAATCTCTCACAGCTTGGGGACCTGACGATCCT 1784
Query 1562 TT-TACTCC 1569
|| | ||||
Sbjct 1785 TTCTCCTCC 1793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92519604435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5