BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920894

Length=792
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16550.1 | Symbols:  | HSP20-like chaperone | chr4:9318442-9...   309    3e-83


> AT4G16550.1 | Symbols:  | HSP20-like chaperone | chr4:9318442-9324254 
REVERSE LENGTH=2232
Length=2232

 Score =  309 bits (167),  Expect = 3e-83
 Identities = 313/383 (82%), Gaps = 12/383 (3%)
 Strand=Plus/Plus

Query  395   ATCTTCGTAGCTATGGTCCTCACAAATTTCCGCATGCCTCGGACCCCT-TTGACCCGACG  453
             |||| ||| || | ||||||||||||||||| |||| | ||||  |||  ||| ||||  
Sbjct  1856  ATCTGCGTGGCAACGGTCCTCACAAATTTCCCCATGGCACGGA-TCCTAATGATCCGAAA  1914

Query  454   TTAACGGGTCGGGTGTTGAAGCCACACCCATGTGTGCTTC-AAGGATCGGAGATGGCCTA  512
             |||||||||||| | |||| ||||||||||||||||   | | ||||| |||||||| ||
Sbjct  1915  TTAACGGGTCGGATATTGATGCCACACCCATGTGTG-AACTATGGATCAGAGATGGCTTA  1973

Query  513   TGAGTCGAAGAAGCTCCAAAACGGCAGCCTATACGTGCGTGTAGACATGCCAGGCGTTCC  572
             |||||| ||| |||| ||||||||  | ||||||||||||||||||||||||||||||||
Sbjct  1974  TGAGTCCAAGCAGCTTCAAAACGGTGGTCTATACGTGCGTGTAGACATGCCAGGCGTTCC  2033

Query  573   CAAAGACAGGTTCACCATCTCCGTTACGAACGGGAGAGTGATGGTGACTGGTGAAGCTCC  632
             |||||| |  |||||  || | || | ||| |||||||||| |||||| |||||||||||
Sbjct  2034  CAAAGAGAACTTCACTGTCGCAGTCATGAATGGGAGAGTGAGGGTGACCGGTGAAGCTCC  2093

Query  633   TGCCGTTAGCCACGACTCAGGTGGTCGGTTCTATTCTGGCGACGTGGCTATGCT-TGATA  691
             |||| |||||||||||||| |||| || |||||  |||| ||||| |||||||| |   |
Sbjct  2094  TGCCATTAGCCACGACTCAAGTGGACGTTTCTACACTGGTGACGTTGCTATGCTCTCC-A  2152

Query  692   CTC-TTATC-AGCAT-CCCTAGCCGTCGGATCAAAACCATCGCCAAGAACGGTGTGATTC  748
             ||| || || | ||| ||| | ||||  |||||| | ||| || ||||||||||| ||||
Sbjct  2153  CTCCTT-TCGA-CATTCCC-ATCCGTAAGATCAAGATCATTGCTAAGAACGGTGTCATTC  2209

Query  749   GTTTGATTATCCCTCCCGTTTGA  771
             || |||| |||||||||||||||
Sbjct  2210  GTCTGATCATCCCTCCCGTTTGA  2232



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38529590749


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5