BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920906

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G19530.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   573    4e-163


> AT1G19530.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation, 
anaerobic respiration; LOCATED IN: cellular_component 
unknown; EXPRESSED IN: leaf apex, inflorescence meristem, 
hypocotyl, root, flower; EXPRESSED DURING: petal differentiation 
and expansion stage; Has 47 Blast hits to 47 proteins 
in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr1:6763915-6764971 FORWARD LENGTH=700
Length=700

 Score =  573 bits (310),  Expect = 4e-163
 Identities = 365/392 (93%), Gaps = 2/392 (1%)
 Strand=Plus/Plus

Query  4    GAAAAGATTAAGAGCAAATGGGTTCCTTAGTGTCAGGATGGGACTCTCCAGTAATGGATC  63
            ||||||||||| ||||||||||||| ||| |||||||||||||||||| ||||| |||||
Sbjct  45   GAAAAGATTAATAGCAAATGGGTTCTTTAATGTCAGGATGGGACTCTCGAGTAAGGGATC  104

Query  64   CCAACTCAGTGAGACGGTGCAAGTCACTAACAAGAGAAGAAATCGACACTTTTTGGAAAA  123
            |||| ||||||||| |||||||||| || |||||||||||||||||||||||||||||||
Sbjct  105  CCAAATCAGTGAGAAGGTGCAAGTCGCTCACAAGAGAAGAAATCGACACTTTTTGGAAAA  164

Query  124  CAaagaagaagaatgaagaagaagaaCATGTTCAAGCCGTTTCCAAGTTGGTAACTCAGG  183
            | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  165  CGAAGAAGAAGAATGAAGAAGAAGAACATGTTCAAGCCTTTTCCAAGTTGGTAACTCAGG  224

Query  184  AAGGTGCACAAAGCCAAGCGCAAGAAGA-GAAGAGAGTAGAGGATCTTTTTGAGAACCAA  242
            |||||||||||||||||||| |||| || |||||| ||||| ||||||||||||||||||
Sbjct  225  AAGGTGCACAAAGCCAAGCGAAAGA-GAAGAAGAGTGTAGATGATCTTTTTGAGAACCAA  283

Query  243  AGCAAGAGAAGTGGATGGTGGAGAAAAACCAACTGGGCGTTCTTGAACGAGCCAAGGGAG  302
            |||||||| ||||||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct  284  AGCAAGAGTAGTGGATGGTGGAGAAAAACCTACTGGGCGTTCTTGAATGAGCCGAGGGAG  343

Query  303  GAAGAGGGTCGACAGAACAATTACGTGCCGCAGTTCAAAGTGGCTCACATCGCCAAAATC  362
            ||||||||||||| |||||| |||||| |||| |||||||| ||||||||||||||||| 
Sbjct  344  GAAGAGGGTCGACCGAACAACTACGTGTCGCAATTCAAAGTTGCTCACATCGCCAAAATT  403

Query  363  GCGGGCTCGTAATGAAGCTATAATCACCGGCT  394
            ||||||||||||||| ||||||||||||||||
Sbjct  404  GCGGGCTCGTAATGACGCTATAATCACCGGCT  435



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18599067130


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5