BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920910
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19600.1 | Symbols: | pfkB-like carbohydrate kinase family ... 1788 0.0
> AT1G19600.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr1:6778988-6781173 FORWARD LENGTH=1440
Length=1440
Score = 1788 bits (968), Expect = 0.0
Identities = 1053/1095 (96%), Gaps = 2/1095 (0%)
Strand=Plus/Plus
Query 16 AGAGAATGGTAGCTGAGGCCTTGCCCAAGTGCCCTGAAGCTCCACTTGTACTTGGACTCC 75
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 93 AGAGAATGGTAGCTGAGGCCTTGCCCAAATGCCCTGAAGCTCCACTCGTACTTGGACTCC 152
Query 76 AACCCGCAGCTCTTATCGATAACGTCGCTCCCGTCGATTGGTCTTTACTCGATCAAATTC 135
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 153 AACCCGCAGCTCTTATCGATAACGTCGCTCCTGTTGATTGGTCTTTACTCGATCAAATTC 212
Query 136 CCGGTGATCGCGGTGGCTCCATTGCTGTGCAAAAGGATGAGTTAGATCACATACTAAAAG 195
||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 213 CCGGTGATCGCGGTGGCTCCATTGCCGTGCAAAAGGATGAGTTAGAGCACATGCTAAAAG 272
Query 196 AGCTTGATACACATATCAGTGTGGCTCCATTAAAGAAGATGGCTGGAGGAAGTGTCACCA 255
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 273 AGCTTGATGCACATATCAGTGTGGCTCCATTAAAGAAGATGGCTGGAGGAAGTGTGACCA 332
Query 256 ATACAGTTCGAGGCTTGAGTGTTGGTTTCGGTGTAGCCACTGGGATTATCGGGGCTTATG 315
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 333 ATACAGTTCGAGGCTTGAGTGTTGGGTTCGGTGTAGCCACTGGGATTATTGGTGCTTATG 392
Query 316 GAGACGATGAACAAGGCCAATTGTTTGTGACCAATATGGGTTTTAGTGGTGTGAGTATCT 375
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 393 GAGACGATGAACAAGGCCAATTGTTTGTTAGCAATATGGGTTTTAGTGGTGTGAGTATCT 452
Query 376 CAAGGCTCAGGAAGAAGAAAGGTTCCACTGCTCAGTGTGTTTGCTTGGTTGATGACTCTG 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 CAAGGCTCAGGAAGAAGAAAGGTTCCACTGCTCAGTGTGTTTGCTTGGTTGATGACTCTG 512
Query 436 GTAATCGAACAATGCGACCATGTCTCTCCAGTGCCGTGAAGATTCAGGCAGATGAATTAA 495
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 513 GTAATCGAACAATGCGACCATGTCTCTCGAGTGCTGTGAAGATTCAGGCAGATGAATTAA 572
Query 496 GCAAAGAAGATTTCACAGGCTCTAAGTGGTTGGTCCTAAGATATGCTGTTCTTAATTTAG 555
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 573 GCAAAGAAGATTTCACAGGCTCTAAGTGGTTGGTTCTTAGATATGCTGTTCTTAATTTAC 632
Query 556 AAGTAATTCAAGCAGCCATTCGATTTGCCAAGCAAGAAGGTCTCTCTGTTTCGATGGATT 615
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 633 AAGTAATTCAAGCAGCCATTCGATTTGCCAAGCAAGAAGGTCTTTCTGTTTCCTTGGATT 692
Query 616 TAGCTAGTTTTGAGATGGTCCGGAATTCTAGATCAGAGCTTCGACAGCTTTTGGAGTCTG 675
|||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||
Sbjct 693 TAGCTAGTTTTGAGATGGTCAGGAATTCTAAATCAGAGCTTCGACAGCTTCTGGAGTCTG 752
Query 676 GTAACATAGATCTTTGCTTTGCTAATGAGGACGAAGCAGCAGAGCTCCTGAGGGGTGAGC 735
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 753 GTAACATAGATCTTTGCTTTGCTAACGAGGACGAAGCAGCAGAGCTCCTTAGGGGTGAGC 812
Query 736 AAGAAGCGGGTCCGGAGGCAGCTCTTGATTTCCTAGGCAGACATTGCAGATGGGCTGTGG 795
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 813 AAGAAGCGGGTCCGGAGGCAGCTCTTGAGTTCCTAGGCAGACATTGCAGATGGGCTGTGG 872
Query 796 TAACTTTGGGGCCTAAAGGGTGCATTGCAAAACATGATAAAGAGGTGGTACAAATACCAG 855
||||||| ||| | |||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 873 TAACTTTAGGGTCGAAAGGGTGCATTGCAAAACATGATAAAGAGGTGGTACATATATCAG 932
Query 856 CCATAGGAGAGACAGTAGCAACTGATGCCACAGGAGCGGGTGACCTATTTGCAAGCGGGT 915
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 933 CCATAGGAGAGACAGTAGCAACTGATGCCACAGGAGCCGGTGACCTATTCGCAAGCGGGT 992
Query 916 TTCTGTACGGATTAATAAAGGGATTGTCTTTGGAAGAATGTTGCAAAGTGGGATCATGCA 975
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 TTCTGTACGGACTAATAAAGGGATTGTCTTTGGAAGAATGTTGCAAAGTGGGATCATGCA 1052
Query 976 GTGGTGGATCTGTCATCCGTGCTCTTGGAGGAGAAGTAACCCCAGAAAACTGGCAATGGA 1035
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1053 GTGGTGGATCTGTCATCCGTGCTCTCGGTGGAGAAGTAACCCCAGAAAACTGGCAATGGA 1112
Query 1036 TGCACAAACAGTTGCAGTTGAAGGACTTACCTGTTCCTGACATCCACAACTGATGAT--C 1093
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1113 TGCACAAACAGTTGCAGTTGAAGGGCTTACCTGTTCCTGACATCCACAACTGATGATATC 1172
Query 1094 ACCAGCAGATTGTAG 1108
|||| ||||||||||
Sbjct 1173 ACCATCAGATTGTAG 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316989690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5