BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920924

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G19730.1 | Symbols: ATTRX4, ATH4 | Thioredoxin superfamily p...   606    4e-173


> AT1G19730.1 | Symbols: ATTRX4, ATH4 | Thioredoxin superfamily 
protein | chr1:6822864-6824071 REVERSE LENGTH=710
Length=710

 Score =  606 bits (328),  Expect = 4e-173
 Identities = 375/398 (94%), Gaps = 1/398 (0%)
 Strand=Plus/Plus

Query  4    TCTCAGATTTGGAAGAAATGGCGGCAGAAGAGGGACAAGTGATTGGTTGCCACGCCAACG  63
            |||||||||||| ||||||||||||||||||||| |||||||||||||| ||| | ||||
Sbjct  35   TCTCAGATTTGGGAGAAATGGCGGCAGAAGAGGGTCAAGTGATTGGTTGTCACACGAACG  94

Query  64   ATGTATGGACCGTGCAACTCGACAAAGCCAAAGAATCCAACAAGCTGATTGTGATAGATT  123
            |||||||||| |||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct  95   ATGTATGGACTGTGCAACTTGATAAAGCCAAAGAATCCAACAAGCTGATTGTGATTGATT  154

Query  124  TCACTGCTTCATGGTGTCCACCATGCCGCATGATTGCTCCTATTTTCACCGATTTGGCCA  183
            |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct  155  TCACTGCTTCATGGTGTCCACCATGCCGCATGATTGCTCCAATTTTCAACGATTTGGCCA  214

Query  184  AGAAGTTCGTGACAAGTGCCATCTTCTTCAAGGTCGATGTTGATGAACTTCAGAGTGTAG  243
            |||||||| || |||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct  215  AGAAGTTCATGTCAAGTGCCATCTTCTTCAAGGTGGATGTTGATGAACTTCAGAGTGTTG  274

Query  244  CTCAAGAGTTTGGTGTGGAGGCAATGCCAACCTTTGTGTTCATTAAAGCCGGCGAGGTTG  303
            || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  275  CTAAAGAGTTTGGTGTGGAGGCAATGCCAACCTTTGTGTTCATTAAAGCCGGCGAAGTTG  334

Query  304  TGGATAAGCTCGTTGGTGCAAATAAAGAAGATCTTCAGGCGAAAATAGTGAAGCATACTG  363
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  335  TGGATAAGCTCGTTGGTGCGAATAAAGAAGATCTTCAGGCGAAAATAGTGAAGCATACTG  394

Query  364  GTGTTGCCACTGCTTAAATCAGTTTTAGGCATAA-TAA  400
            ||||| | ||||| ||||||||||| |||||||| |||
Sbjct  395  GTGTTACAACTGCGTAAATCAGTTTGAGGCATAAATAA  432



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18900673624


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5