BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920931

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G19810.1 | Symbols:  | pseudogene, putative cell division co...   307    3e-83


> AT1G19810.1 | Symbols:  | pseudogene, putative cell division 
control protein, blastp match of 53% identity and 2.2e-113 P-value 
to GP|6069665|dbj|BAA85441.1||AP000616 EST D15969(C1695) 
corresponds to a region of the predicted gene.~similar to 
valosin-containing protein (U20213) {Oryza sativa (japonica 
cultivar-group)} | chr1:6848382-6849988 REVERSE LENGTH=1607
Length=1607

 Score =  307 bits (166),  Expect = 3e-83
 Identities = 214/236 (91%), Gaps = 8/236 (3%)
 Strand=Plus/Plus

Query  43    CAAAACGTGGATC---AGAAGGTGCTTGGGTAGTTGAACGGA-CATTGATTCAGTTGCTC  98
             |||||||||| ||   ||||||||||||||| ||||||  || |||||| ||||||||||
Sbjct  1250  CAAAACGTGGGTCAGGAGAAGGTGCTTGGGTTGTTGAA-AGACCATTGACTCAGTTGCTC  1308

Query  99    AATGAAATGATGAGCGGTGGaaaaaaaCGAAATGGTGTGTTTGTGATTGGTGCAACGAAT  158
             |||| ||  ||||||||||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct  1309  AATG-AA--ATGAGCGGTGGAAAAGAACGAGATGGAGTGTTTGTGATTGGTGCAACGAAT  1365

Query  159   AGACCGGACACGATGTATCCTGCGATTACAAGACCAGGGAGGTTTGGGAAACATCTCTAT  218
             |||||||| | |||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1366  AGACCGGAGATGATGGATCCTGCGATTACAAGACCAGGGAGGTTTGGGAAACATATCTAT  1425

Query  219   GTACCTCTTCCAAACTCTGTTCAACGAGGTTTGATTCTGTAATATCTTGCGAGGAA  274
              |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct  1426  ATACCTCTTCCAAACTCTGTTCAACGAGGTTTGATTCTGAAATCTCTTGCGAGGAA  1481



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12868543744


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5