BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920937
Length=506
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19840.1 | Symbols: | SAUR-like auxin-responsive protein fa... 743 0.0
AT1G75590.1 | Symbols: | SAUR-like auxin-responsive protein fa... 412 1e-114
> AT1G19840.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:6872794-6873255 REVERSE LENGTH=462
Length=462
Score = 743 bits (402), Expect = 0.0
Identities = 442/462 (96%), Gaps = 0/462 (0%)
Strand=Plus/Plus
Query 22 ATGGCCGGAAGTCTTGTAAAATGCAGCAAGATCCGTCACATTGTGAGACTCAGACAAATG 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCGGAAGTCTTGTAAAATGCAGCAAGATCCGTCACATTGTGAGACTCAGACAAATG 60
Query 82 CTCCGGCGATGGCGTAACAAAGCTCGGTTATCTTCGGTCAGCCGCTGTGTACCGTCGGAT 141
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 61 CTCCGGCGATGGCGTAACAAAGCGCGGTTATCTTCGGTCAGCCGTTGTGTACCGTCGGAT 120
Query 142 GTTCCATCTGGACACGTGGCAGTCTGTGTGGGCAGCGGTTGCAGGAGATTTGTGGTGCGT 201
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 121 GTTCCATCTGGACACGTGGCAGTTTGTGTGGGTAGCGGTTGCAGGAGATTTGTGGTGCGT 180
Query 202 GCGTCGTACCTGAACCATCCGATCATAAGCAATCTTCTGGTTCAAGCTGAAGAAGAGTTC 261
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 181 GCGTCGTACCTGAACCATCCTATCATAAGCAATCTTCTGGTTCAAGCTGAGGAAGAGTTT 240
Query 262 GGTTTCGCTAACCAAGGACCGTTGGTTATTCCTTGTGAAGAATCGGTTTTCGAAGAAGCG 321
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GGTTTTGCTAACCAAGGACCGTTGGTTATTCCTTGCGAAGAATCGGTTTTCGAAGAAGCG 300
Query 322 ATTCGGTTTATTTCTCGGTCTGATTCGTCTCGGTCAAGCCGGTTTACTTGTCCTGATGAT 381
|| |||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 301 ATCCGGTTTATATCCCGGTCTGATTCTTCTCGGTCTAGCCGGTTTACTTGTCCTGATGAT 360
Query 382 CTTCAGAAATGTAACGGAGGAATCAAAATCAAAAGCAAGCTAGATCTGTTGATTGAATCT 441
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 361 CTTCAGAAATGTAACGGAGGGATCAAAATCAAAAGCAAGCTAGATCTGATGATTGAATCT 420
Query 442 CGGCCGTTGCTTCACGGCGTCGCCGAGAAAGCCATCTGGTGA 483
|| ||||||||||| |||||||| |||||||| |||||||||
Sbjct 421 CGACCGTTGCTTCATGGCGTCGCTGAGAAAGCTATCTGGTGA 462
> AT1G75590.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:28382896-28383768 REVERSE LENGTH=873
Length=873
Score = 412 bits (223), Expect = 1e-114
Identities = 394/476 (83%), Gaps = 13/476 (3%)
Strand=Plus/Plus
Query 17 aaaaaaTGGCCGGAAGTCTTGTAAAATGCAGCAAGATCCGTCACATTGTGAGACTCAGAC 76
|||||||||| ||| |||| | ||||||||||||||||||||||||||||| || || |
Sbjct 50 AAAAAATGGCTGGAGGTCTCGGGAAATGCAGCAAGATCCGTCACATTGTGAGGCTAAGGC 109
Query 77 AAATGCTCCGGCGATGGCG-TAACAAAGCTCGG-T-T-ATCTTCGGTCAGCCGCTGTGTA 132
||||||| || || ||||| | | |||| || | | ||||| ||||||| ||||||
Sbjct 110 AAATGCTTCGACGGTGGCGCGATC-AAGCGAGGATGTCTTCTTCTTTCAGCCGTTGTGTA 168
Query 133 CCGTCGGATGTTCCATCTGGACACGTGGCAGTCTGTGTGGGCAGCGGTTGCAGGAGATTT 192
||||||||||| || || ||||||||||| |||| || || ||| |||| |||||||||
Sbjct 169 CCGTCGGATGTACCGTCAGGACACGTGGCGGTCTACGTAGGAAGCAGTTGTAGGAGATTT 228
Query 193 GTGGTGCGTGCGTCGTACCTGAACCATCC-GATCATAAGCAATCTTCTGGTTCAAGCTGA 251
|||||||| ||| |||| ||||||||||| | || |||| || ||||| |||||||||||
Sbjct 229 GTGGTGCGCGCGACGTATCTGAACCATCCTG-TCCTAAGGAACCTTCTTGTTCAAGCTGA 287
Query 252 AGAAGAGTTCGGTTTCGCTAACCAAGGACCGTTGGTTATTCCTTGTGAAGAATCGGTTTT 311
|||||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 288 GGAAGAGTTTGGTTTCGTTAACCAAGGTCCGTTGGTTATCCCTTGTGAAGAATCGGTTTT 347
Query 312 CGAAGAAGCGATTCGGTTTATTTCTCGGTCTGATTCGTCTCGGTCAAGCCGGTTTACTTG 371
||| ||| ||||||||||||| || |||||||||||| | |||||||| |||||||||||
Sbjct 348 CGAGGAATCGATTCGGTTTATATCCCGGTCTGATTCGACCCGGTCAAGACGGTTTACTTG 407
Query 372 TCCTGATGATCTTCAGAA-A-T-GTAACGGAGGAATCAAAATCAAAAGCAAGCTAGATCT 428
||| |||||| ||||||| | | | ||| || | ||||| ||||||||| |||||
Sbjct 408 TCCCGATGATTTTCAGAAGAATTGCCACGT-GG--TGGGAATCAGAAGCAAGCTTGATCT 464
Query 429 GTTGATTGAATCTCGGCCGTTGCTTCACGGCGTCGCCGAGAAAGCCATCTGGTGAT 484
| ||| |||||||| ||||| ||||||||||| | || |||||| | |||||||
Sbjct 465 ATGGATCGAATCTCGACCGTTACTTCACGGCGTTACTGAAAAAGCCGTTTGGTGAT 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24162624707
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5