BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg920939 Length=444 Score E Sequences producing significant alignments: (Bits) Value AT1G11950.1 | Symbols: | Transcription factor jumonji (jmjC) d... 204 7e-52 AT1G09150.1 | Symbols: | pseudouridine synthase and archaeosin... 117 9e-26 AT2G39190.2 | Symbols: ATATH8 | Protein kinase superfamily prot... 89.8 2e-17 > AT1G11950.1 | Symbols: | Transcription factor jumonji (jmjC) domain-containing protein | chr1:4034587-4038758 REVERSE LENGTH=2955 Length=2955 Score = 204 bits (110), Expect = 7e-52 Identities = 133/144 (92%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 206 GAGAAGAAGCAGAGGAGCTCTGTTAAAAAGAGAGTAACTACATGGAAAGAAGAAGAAGTT 265 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 435 GAGAAGAAGCAGAGGAGCTCTGTTAAAAAGAGAGCAACTACATGGAAAGAAGAAGAAGTT 494 Query 266 GTTGATGTTGAT-AACAAGAAATGCGAACAAGAACTCCAAGTAGTTCCTTTCATCAAGGC 324 |||| || |||| || ||||||||||||||| |||||||| ||||||||| || |||||| Sbjct 495 GTTGTTGATGATGAA-AAGAAATGCGAACAACAACTCCAACTAGTTCCTTCCAGCAAGGC 553 Query 325 AATATCTCGTAGCAGGAGCAAGAA 348 || |||||| |||||||||||||| Sbjct 554 AACATCTCGAAGCAGGAGCAAGAA 577 > AT1G09150.1 | Symbols: | pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein | chr1:2946229-2949159 FORWARD LENGTH=1014 Length=1014 Score = 117 bits (63), Expect = 9e-26 Identities = 71/75 (95%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 355 CAACCTTAGCTTTGATTTGATTTGTTTTCAAACATTTGATACTTATTTTAAGAGGGAACA 414 |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 851 CAACCTTAGCTTTGGTTTGATTTGTTTTCAAACATTTGATACTTATTTTATGAGGGAACG 910 Query 415 TCAACCCTAGCTAAG 429 |||||| |||||||| Sbjct 911 TCAACCTTAGCTAAG 925 > AT2G39190.2 | Symbols: ATATH8 | Protein kinase superfamily protein | chr2:16349968-16355963 FORWARD LENGTH=2835 Length=2835 Score = 89.8 bits (48), Expect = 2e-17 Identities = 52/54 (96%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 135 AGTTGGTCAATCCCTTTCGACGAGGCCAGATATCATTGGGACTGAAATCTCCAA 188 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 817 AGTTGGTCAATCGCTTTCCACGAGGCCAGATATCATTGGGACTGAAATCTCCAA 870 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21112454580 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5