BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920939

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G11950.1 | Symbols:  | Transcription factor jumonji (jmjC) d...   204    7e-52
  AT1G09150.1 | Symbols:  | pseudouridine synthase and archaeosin...   117    9e-26
  AT2G39190.2 | Symbols: ATATH8 | Protein kinase superfamily prot...  89.8    2e-17


> AT1G11950.1 | Symbols:  | Transcription factor jumonji (jmjC) 
domain-containing protein | chr1:4034587-4038758 REVERSE LENGTH=2955
Length=2955

 Score =  204 bits (110),  Expect = 7e-52
 Identities = 133/144 (92%), Gaps = 2/144 (1%)
 Strand=Plus/Plus

Query  206  GAGAAGAAGCAGAGGAGCTCTGTTAAAAAGAGAGTAACTACATGGAAAGAAGAAGAAGTT  265
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  435  GAGAAGAAGCAGAGGAGCTCTGTTAAAAAGAGAGCAACTACATGGAAAGAAGAAGAAGTT  494

Query  266  GTTGATGTTGAT-AACAAGAAATGCGAACAAGAACTCCAAGTAGTTCCTTTCATCAAGGC  324
            |||| || |||| || ||||||||||||||| |||||||| ||||||||| || ||||||
Sbjct  495  GTTGTTGATGATGAA-AAGAAATGCGAACAACAACTCCAACTAGTTCCTTCCAGCAAGGC  553

Query  325  AATATCTCGTAGCAGGAGCAAGAA  348
            || |||||| ||||||||||||||
Sbjct  554  AACATCTCGAAGCAGGAGCAAGAA  577


> AT1G09150.1 | Symbols:  | pseudouridine synthase and archaeosine 
transglycosylase (PUA) domain-containing protein | chr1:2946229-2949159 
FORWARD LENGTH=1014
Length=1014

 Score =  117 bits (63),  Expect = 9e-26
 Identities = 71/75 (95%), Gaps = 0/75 (0%)
 Strand=Plus/Plus

Query  355  CAACCTTAGCTTTGATTTGATTTGTTTTCAAACATTTGATACTTATTTTAAGAGGGAACA  414
            |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct  851  CAACCTTAGCTTTGGTTTGATTTGTTTTCAAACATTTGATACTTATTTTATGAGGGAACG  910

Query  415  TCAACCCTAGCTAAG  429
            |||||| ||||||||
Sbjct  911  TCAACCTTAGCTAAG  925


> AT2G39190.2 | Symbols: ATATH8 | Protein kinase superfamily protein 
| chr2:16349968-16355963 FORWARD LENGTH=2835
Length=2835

 Score = 89.8 bits (48),  Expect = 2e-17
 Identities = 52/54 (96%), Gaps = 0/54 (0%)
 Strand=Plus/Plus

Query  135  AGTTGGTCAATCCCTTTCGACGAGGCCAGATATCATTGGGACTGAAATCTCCAA  188
            |||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct  817  AGTTGGTCAATCGCTTTCCACGAGGCCAGATATCATTGGGACTGAAATCTCCAA  870



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21112454580


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5