BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920940

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G23780.1 | Symbols:  | F-box family protein | chr1:8406686-8...   178    2e-44


> AT1G23780.1 | Symbols:  | F-box family protein | chr1:8406686-8408525 
REVERSE LENGTH=1840
Length=1840

 Score =  178 bits (96),  Expect = 2e-44
 Identities = 118/128 (92%), Gaps = 3/128 (2%)
 Strand=Plus/Plus

Query  77   CGACGGCTCAATCCCACGGCGCCTT-CTCCGTTCATATCTATCGCTTAATCGTAAAGACG  135
            |||||| |||| ||||||| ||||| ||||||||  |||| ||||| |||||||||||||
Sbjct  130  CGACGGATCAACCCCACGGTGCCTTCCTCCGTTC--ATCTCTCGCTCAATCGTAAAGACG  187

Query  136  AGCTCATCACGCCTTCGCCGGAGGATACGTTTCGATCTCTTGGTTTAATATCCGGTGACC  195
            ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct  188  AGCTCATCACGCCTTCGCCGGAGGATACGCTCCGATCTCTTGGTTTAATATCCGGTGACC  247

Query  196  TAATTTAC  203
            ||||||||
Sbjct  248  TAATTTAC  255



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9054243180


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5