BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920943
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19880.1 | Symbols: | Regulator of chromosome condensation ... 2649 0.0
> AT1G19880.1 | Symbols: | Regulator of chromosome condensation
(RCC1) family protein | chr1:6900415-6904069 REVERSE LENGTH=2101
Length=2101
Score = 2649 bits (1434), Expect = 0.0
Identities = 1583/1656 (96%), Gaps = 6/1656 (0%)
Strand=Plus/Plus
Query 3 TTTTTGGTCGGAGAAGTTATGGCGGCAGCGATGAATTCGTCGGAGAAGAAGGATGAGAGC 62
||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||
Sbjct 234 TTTTTGGTCGGAGAAGTAATGGCGGAAGCGATGAATTCGTCGGAGAAGAAAGATGAGAGC 293
Query 63 TCGGAGGAGAAGGGAGGTGAGCTTTTGTTCTGTGGTGCTACAGCTTGGGATATCATTGGA 122
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 294 TCGGAGGAGAAGGGAGGTGAGCTTTTGTTCTGTGGTGCTACGGCTTGGGATATCATTGGA 353
Query 123 AAACGCAAAGGTGCCATGGAAGGTAACTTGGTCTCTCCTACTCGTTTAAGACCACTCGTC 182
||||| |||||||| ||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 354 AAACGAAAAGGTGCGATGGAAGGTAACTTGGTCTCTCCTACTCGGCTAAGGCCACTCGTC 413
Query 183 GGCGTTAACATTCGATTCGTCGCCTCTGGTTGCGCTTCGTTTCATTGTGTGGCATTGGAC 242
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 414 GGCGTTAACATTCGATTCGTCGCCACTGGTTGCGCTTCGTTTCATTGTGTGGCATTGGAC 473
Query 243 GTTGAAGGTCGTTGTTACACCTGGGGACGCAATGAGAAAGGTCAATTAGGTCATGGAGAT 302
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 474 GTTGAAGGTCGTTGTTACACTTGGGGACGTAATGAGAAAGGTCAATTAGGTCATGGTGAT 533
Query 303 ATGATTCAACGTGATAGGCCAACAGTTGTGTCAGGACTCTCTAAGCACAAAATTGTGAAA 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 ATGATTCAACGTGATAGGCCAACAGTTGTGTCAGGACTCTCTAAGCACAAAATTGTGAAA 593
Query 363 GCGGCAGCAGGGAGGAGCCACACGGTAGTGGTTAGTGATGATGGACAGTCTCTAGCTTTT 422
||||||||||| |||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 594 GCGGCAGCAGGAAGGAACCACACGGTAGTGGTTAGTGATGATGGACAGTCTCTTGGTTTT 653
Query 423 GGCTGGAATAAGTATGGGCAGTTGGGTTCGGGTTCAGCCAAAAACGGGTTTGTTTCTGTA 482
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 654 GGCTGGAATAAGTATGGGCAGTTGGGTTTGGGTTCAGCCAAAAACGGTTTTGTTTCTGTA 713
Query 483 GAAGTTGAATCAACGCCTCTTCCCTGTGTTGTGTCTGATGAGGTCACAAACGTTGCCTGT 542
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GAAGTTGAATCGACGCCTCTTCCCTGTGTTGTGTCTGATGAGGTCACAAACGTTGCCTGT 773
Query 543 GGGGCTGACTTTACAGTGTGGTTATCATCTACTGAAGGAGCCTCTATACTGACTGCCGGT 602
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 774 GGGGCTGACTTCACAGTGTGGTTATCGTCTACTGAAGGAGCCTCTATACTGACTGCCGGT 833
Query 603 CTCCCACAGTATGGTCAACTTGGTCATGGAACTGATAATGAGTTCAATATGAAGGATAGT 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CTCCCACAGTATGGTCAACTTGGTCATGGAACTGATAATGAGTTCAATATGAAGGATAGT 893
Query 663 TCAGTTAAACTCGCCTACGAAGCTCAGCCACGACCCAAAGCCATCGCCTCTCTTGCAGGG 722
||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 894 TCAGTTAGACTCGCCTACGAAGCTCAGCCACGTCCTAAAGCCATCGCCTCTCTTGCAGGG 953
Query 723 GAAACCATTGTCAAAGTTGCATGTGGAACAAATCATACTGTGGCCGTAGATAAGAATGGA 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GAAACCATTGTCAAAGTTGCATGTGGAACAAATCATACTGTGGCCGTAGATAAGAATGGA 1013
Query 783 TTTGTTTACACGTGGGGCTATGGTGGATATGGAAGGCTTGGACATAGGGAGCAGAAGGAT 842
| ||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 1014 TATGTTTACACGTGGGGATTTGGTGGATATGGAAGGCTTGGACATAGGGAGCAGAAAGAT 1073
Query 843 GAGTGGGCTCCTCGCCGTATTGATGTGTTTCAAAGGAATAATGTTTTGCCTCCTAATGCC 902
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1074 GAGTGGGCTCCACGCCGTATTGATGTGTTTCAGAGGAATAATGTTTTGCCTCCTAATGCC 1133
Query 903 ATTGTTTCCGCTGGCTCTGCAAACTCCGCGTGTACCGCTGGTGGAGGACAATTATATATG 962
||| |||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||
Sbjct 1134 ATTCTTTCTGCTGGTTCTGCAAACTCCGCTTGTACAGCTGGTGGTGGACAGTTATATATG 1193
Query 963 TGGGGAAAGATAAAGAACAATGGTGATGATTGGATGTACCCTAAACCTATGATGGATTTA 1022
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1194 TGGGGAAAGATAAAGAACAATGGTGATGATTGGATGTACCCTAAACCGATGATGGATTTA 1253
Query 1023 AGTGGTTGGAACTTGCGTTGGATGGATTCAGGAAGTATGCATCACTTTGTTGGTGCCGAT 1082
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1254 AGTGGTTGGAACTTGCGTTGGATGGATTCAGGAAGCATGCATCATTTTGTTGGTGCCGAC 1313
Query 1083 AGTTCTTGCATAAGTTGGGGTCATGCTCAGTATGGAGAACTTGGTTATGGCCCCAATGGT 1142
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1314 AGTTCTTGCATAAGTTGGGGTCATGCTCAGTATGGAGAACTTGGTTATGGCCCCAACGGT 1373
Query 1143 CAAAAATCCTCTGCTGCACCAAAAAAGGTGGATATGCTCGAGGGAATGCATGTAATGGGT 1202
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1374 CAAAAATCCTCTGCAGCACCTAAGAAGGTGGATATGCTCGAGGGAATGCATGTAATGGGT 1433
Query 1203 GTGGCATGCGGTTTTTGCCATTCAATGGTCATAGTCGACAGAACAGATATCGCTGATCGG 1262
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||
Sbjct 1434 GTGGCATGCGGTTTTTGCCATTCAATGGTCATTGTTGACAGAACAGATATCGCTGATAGG 1493
Query 1263 CTTGAGCAGCTCGAGATTTACGATGGGAAAGGATCATTAGAAGAGAGTATAGAAGAAGTC 1322
||||||||||||||| | || || |||||||||||||||||||||||| |||||||||||
Sbjct 1494 CTTGAGCAGCTCGAGGTCTATGACGGGAAAGGATCATTAGAAGAGAGTGTAGAAGAAGTC 1553
Query 1323 AAGGAAGAAACTTTGGCGCCAAAGCAACAAGC---TGCCAAAAGAGGTACTTCTAAAAAG 1379
||||||||||||||||| |||||||||||||| | ||||||||||| |||||||||||
Sbjct 1554 AAGGAAGAAACTTTGGCACCAAAGCAACAAGCAGTTACCAAAAGAGGTGCTTCTAAAAAG 1613
Query 1380 AGGAAAACATCAAAAGC-T--TCTGATTCTGAACAAGACAGTGATGAAGATAACAGCGAC 1436
|||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1614 AGGAAAGCATCAAAAGCTTCCTCTGATTCTGAACAAGACAGTGATGAAGATAACAGCGAC 1673
Query 1437 AAGGAGAAGGAAGTTCAAGGTAGTGACGCAGACAGTGACTACAGTGAAGATGGAGAAGAG 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 AAGGAGAAGGAAGTTCAAGGTAGTGACGCAGACAGTGACTACAGTGAAGATGGAGAAGAG 1733
Query 1497 GCCAATGGCAAGAAACAGAGCGCTCGTGGCAGAGGACGTGGTCGTGGAGCACGTGGACGC 1556
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1734 GCCAATGGCAAGAAACAGAGTGCTCGTGGTAGAGGACGTGGTCGTGGAGCACGTGGACGC 1793
Query 1557 GGTGGCCGCACCAGTAACGGAAAGGCTCCGCCGGTAAAAACCGGTGGAAGAAGAGGAAGG 1616
|| |||||||||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct 1794 GGCGGCCGCACCAGTAACGGAAAGGCTCCACCCGTGAAGACCGGTGGAAGAAGAGGAAGG 1853
Query 1617 CCACGTAAGTCTTAAAACGACTCTGACTCTAAACCT 1652
|||||||||||||| ||| |||||||||||||||||
Sbjct 1854 CCACGTAAGTCTTAGAACTACTCTGACTCTAAACCT 1889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81626086170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5