BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920957

Length=565
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G20015.1 | Symbols:  | snoRNA | chr1:6941285-6941373 FORWARD...   165    4e-40


> AT1G20015.1 | Symbols:  | snoRNA | chr1:6941285-6941373 FORWARD 
LENGTH=89
Length=89

 Score =  165 bits (89),  Expect = 4e-40
 Identities = 89/89 (100%), Gaps = 0/89 (0%)
 Strand=Plus/Minus

Query  438  CATCAGAGAGGAGTGATCGGTACATCAATCGGCCACAAAAGGCCTCAGACGACCGTCGTG  497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  89   CATCAGAGAGGAGTGATCGGTACATCAATCGGCCACAAAAGGCCTCAGACGACCGTCGTG  30

Query  498  AGAATTTTAGATCAAATCTCATCACTTGA  526
            |||||||||||||||||||||||||||||
Sbjct  29   AGAATTTTAGATCAAATCTCATCACTTGA  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27126439380


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5