BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920975
Length=529
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25700.1 | Symbols: ASK3, SK3 | SKP1-like 3 | chr2:10948747-... 678 0.0
AT1G20140.1 | Symbols: ASK4, SK4 | SKP1-like 4 | chr1:6986358-6... 669 0.0
> AT2G25700.1 | Symbols: ASK3, SK3 | SKP1-like 3 | chr2:10948747-10949626
REVERSE LENGTH=734
Length=734
Score = 678 bits (367), Expect = 0.0
Identities = 462/507 (91%), Gaps = 9/507 (2%)
Strand=Plus/Plus
Query 16 TTGC-AACGATGGCAG---CGAAG-A-A-GATCATCCTCAAGAGCTCCGACGGTGAATCC 68
|||| ||||||||||| ||||| | | |||||||||||||||||||||||||||||||
Sbjct 67 TTGCAAACGATGGCAGAAACGAAGAAGATGATCATCCTCAAGAGCTCCGACGGTGAATCC 126
Query 69 TTCGAGATCGATGAAGCCGTCGCGGTCGAGTCCCAGACGATTAAGCACATGATCGAGGAC 128
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TTCGAGGTCGAGGAAGCCGTCGCGGTCGAGTCCCAGACGATTAAGCACATGATCGAGGAC 186
Query 129 GACTGCGCCGATAACGGAATTCCGCTTCCCAATGTTACTGGAGCCATCCTTGCGAAGGTT 188
||||||| ||||||||||||||| ||||||||||| || ||||||||||| |||||||||
Sbjct 187 GACTGCGTCGATAACGGAATTCCACTTCCCAATGTCACCGGAGCCATCCTCGCGAAGGTT 246
Query 189 ATTGAGTACTGCAAGAAGCACGTTGAAGCCGCGGCTGAGTCTGGCGGAGACGAGGATTTT 248
|| |||||||||||||| |||||||||||||| |||||| |||| |||||| |||||||
Sbjct 247 ATCGAGTACTGCAAGAAACACGTTGAAGCCGCTGCTGAGGCTGGTGGAGACAAGGATTTC 306
Query 249 TGTGGTTCCACCGAGAACGATGAACTCAAGGCATGGGACAGCGACTTCGTCAAAGTTGAT 308
| |||||||||||||||| | || |||||| | ||||||| ||| |||||||||||||||
Sbjct 307 TATGGTTCCACCGAGAACCACGAGCTCAAGACTTGGGACAACGATTTCGTCAAAGTTGAT 366
Query 309 CAGCCTACACTCTTCGATCTCATCCTGGCTGCGAACTATTTGAACATCAGTGGACTTCTT 368
|| ||||| |||||||||||| | | |||||| |||||||||||||||||||||||||||
Sbjct 367 CATCCTACTCTCTTCGATCTCCTTCGGGCTGCCAACTATTTGAACATCAGTGGACTTCTT 426
Query 369 GACCTAACGTGCAAGGCCGTGGCTGAT-ATGATGAGAGGAAAAACTCCAGAGCAGATGCG 427
||||| ||||||||||||||||||||| | ||||||||| |||||||||| |||||||||
Sbjct 427 GACCTTACGTGCAAGGCCGTGGCTGATCA-GATGAGAGGCAAAACTCCAGCGCAGATGCG 485
Query 428 TGAGCACTTCAACATCAAGAACGATTACACACCTGAGGAAGAGGAGGAGGTTCGCAATGA 487
||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 486 TGAACACTTCAACATCAAGAACGACTACACACCTGAGGAAGAGGCCGAGGTTCGCAATGA 545
Query 488 GAACAAGTGGGCGTTCGAGTGATTGGA 514
||||| |||||||||||||||||||||
Sbjct 546 GAACAGGTGGGCGTTCGAGTGATTGGA 572
> AT1G20140.1 | Symbols: ASK4, SK4 | SKP1-like 4 | chr1:6986358-6987270
FORWARD LENGTH=755
Length=755
Score = 669 bits (362), Expect = 0.0
Identities = 450/492 (91%), Gaps = 8/492 (2%)
Strand=Plus/Plus
Query 32 GAAGAAGATCATCCTCAAGAGCTCCGACGGTGAATCCTTCGAGATCGATGAAGCCGTCGC 91
||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 87 GAAGATGATCATCCTTAAGAGCTCCGACGGTGAATCCTTCGAGATCGAGGAAGCCGTCGC 146
Query 92 GGTCGAGTCCCAGACGATTAAGCACATGATCGAGGACGACTGCGCCGATAACGGAATTCC 151
|| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 147 TGTTAAGTCCCAGACGATTAAGCACATGATTGAGGACGACTGTGCCGATAACGGAATTCC 206
Query 152 GCTTCCCAATGTTACTGGAGCCATCCTTGCGAAGGTTATTGAGTACTGCAAGAAGCACGT 211
||||||||||| || ||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 207 ACTTCCCAATGTCACCGGAGCCATCCTCGCCAAGGTTATTGAGTATTGCAAGAAGCACGT 266
Query 212 TGAAGCCGCGGCTG-AGTCTGGCGGAGACGAGGATTTTTGTGGTTCCACCGAGAACGATG 270
||||||||| |||| || |||| |||||| ||||||| | ||||||| | |||||||| |
Sbjct 267 TGAAGCCGCTGCTGAAG-CTGGTGGAGACAAGGATTTCTATGGTTCCGCTGAGAACGACG 325
Query 271 AACTCAAGGCA-TGGGACAGCGACTTCGTCAAAGTTGATCAGCCTACACTCTTCGATCTC 329
| || || | | ||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 326 AGCTTAA-GAATTGGGACAGCGAATTCGTCAAAGTCGATCAGCCTACTCTCTTCGATCTC 384
Query 330 ATCCTGGCTGCGAACTATTTGAACATCAGTGGACTTCTTGACCTAACGTGCAAGGCCGTG 389
||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 385 ATCTTGGCTGCGAACTATTTGAACATCGGTGGACTTCTTGACCTTACGTGCAAGGCCGTG 444
Query 390 GCTGAT-ATGATGAGAGGAAAAACTCCAGAGCAGATGCGTG-AGCACTTCAACATCAAGA 447
|||||| | ||||||||| |||||||||||||||||||||| | ||||||||||||||||
Sbjct 445 GCTGATCA-GATGAGAGGCAAAACTCCAGAGCAGATGCGTGCA-CACTTCAACATCAAGA 502
Query 448 ACGATTACACACCTGAGGAAGAGGAGGAGGTTCGCAATGAGAACAAGTGGGCGTTCGAGT 507
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 503 ACGATTACACACCTGAGGAAGAGGCGGAGGTTCGCAATGAGAACAAGTGGGCGTTCGAGT 562
Query 508 GATTGGATTGGA 519
|||||||| |||
Sbjct 563 GATTGGATCGGA 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25318010088
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5