BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920998

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G20430.1 | Symbols:  | unknown protein; Has 29 Blast hits to...   294    4e-79


> AT1G20430.1 | Symbols:  | unknown protein; Has 29 Blast hits 
to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:7083196-7083835 REVERSE 
LENGTH=640
Length=640

 Score =  294 bits (159),  Expect = 4e-79
 Identities = 165/168 (98%), Gaps = 0/168 (0%)
 Strand=Plus/Plus

Query  233  AGACACTGCTGTTCTCAAGAAGGAACACGATAGTTTGACGGATCGTATGAGTAAAATCAA  292
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  218  AGACACTGCTGTTCTCAAGAAGGAACAAGATAGTTTGACGGATCGTATGAGTAAAATCAA  277

Query  293  AAGCGATCTTCTTCATCAAGCGTCGATTGACTCTACCGGCGTCTTTGCTTCTCGTCTCCG  352
            ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct  278  AAGCGATCTTCTTCATCAAGCATCGATTGACTCTTCCGGCGTCTTTGCTTCTCGTCTCCG  337

Query  353  TCTACTTTTCGGTGAAGATAAAAAGTGATCGGAGATTTGATTGGTTTG  400
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  338  TCTACTTTTCGGTGAAGATAAAAAGTGATCGGAGATTTGATTGGTTTG  385



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18900673624


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5