BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920999
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20410.1 | Symbols: | Pseudouridine synthase family protein... 1851 0.0
> AT1G20410.1 | Symbols: | Pseudouridine synthase family protein
| chr1:7078898-7082547 REVERSE LENGTH=1709
Length=1709
Score = 1851 bits (1002), Expect = 0.0
Identities = 1060/1089 (97%), Gaps = 0/1089 (0%)
Strand=Plus/Plus
Query 49 TCCAGCGAAAAAGAACCCGTCGCCGGCGAATCAGCCGGCTTGCCCAACGGCCTAGTAAGT 108
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 47 TCCGGCGAAAAAGAACCCGTCGCCGTCGAATCAGCCGGCTTGCCCAACGGCCTAGTAAGT 106
Query 109 CATGGTGACTCTAAGACACGGCGCGTATACGAAACAGCTCGATCTCTGCATTCCGGTGCT 168
|||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 107 CATGGTAACTCCAAGACACGGCGCGTATACGAAACAGCTCGATCTCTGCATACCGGTGCT 166
Query 169 GTGAAAGATCTTCTATCTCTCGGGGTCTGCGAGAGATGTATTTTCCGATTGGTAGCCGTC 228
|||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 167 GTGAAAGATCTTCTCTCTCTCGGGGTCTGTGAGAGATGTATTTTCCGATTGGTATCCGTC 226
Query 229 GAGGCTTTTGATTCCGATATTTCTTCAGTCTCGACTTCAACTCTTCACAGTTGGCTCAAA 288
||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||||||
Sbjct 227 GAGGCTTTTGATTCCGATATTTCATCAGTCTCGACTTCAACTCTGCGCAGCTGGCTCAAA 286
Query 289 TCCGGTGATGGTGAAACTGGTTCATCGGAATCTAGCTGTTCCAGAATCTGCATTGTTTGT 348
|||||||||| ||||||| || ||||||||||||||||||||| ||||||||||||||||
Sbjct 287 TCCGGTGATGATGAAACTAGTGCATCGGAATCTAGCTGTTCCACAATCTGCATTGTTTGT 346
Query 349 TTAGGTATATTGCAGTTCGTTTTTTCCGATGCCAAAAAAGAGCTGGTGAAATCGGATTCT 408
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 347 TTAGGTATATTGCAGTTCGTTTTTTCCGATGTCAAAAAAGAGCTGGTGAAATCGGATTCT 406
Query 409 AGTAGTGATTACGTTTCAAGGATAACGGACTTGGTGAAGCAGGATCGTCATGAGTTCGAT 468
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 AGTAGTGATTACGTTGCAAGGATAACGGACTTGGTGAAGCAGGATCGTCATGAGTTCGAT 466
Query 469 AGCTTTGGTCTTGAAGTCTCTGTGCCATCAACTATCATGGAGAATGAACGTGCACTCTTG 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 AGCTTTGGTCTTGAAGTCTCTGTGCCATCAACTATCATGGAGAATGAACGTGCACTCTTG 526
Query 529 TCATACCTTAAAGGAAAGTATAGCACCGAAGTTTGGCTGCAACGCGACAAATTTTCTGTA 588
|||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||
Sbjct 527 TCATACCTTAAAGGAAAGTACAGCACCGAAGTTTGGCTGCAGCGCGATAAAATTTCTGTA 586
Query 589 AAGGATGCTTTGAAAGTTCTACTCTTGGATCAACTTAAAGCATCGTTGGGCGCTGAATCA 648
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 AAGGATGCCTTGAAAGTTCTACTCTTGGATCAACTTAAAGCATCGTTGGGCGCTGAATCA 646
Query 649 GATTCAAGCTCTTTTCACATCCGTTTGACATACACTAAAGCATCAGACGAGGCTCAGGGT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GATTCAAGCTCTTTTCACATCCGTTTGACATACACTAAAGCATCAGACGAGGCTCAGGGT 706
Query 709 GCTTCTGAAACAACGCATGAAAGTAAGAGGAGGAAAACAGACGCAGAGAATGGTTCAAAC 768
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 707 GCTTCTGAAACAACGCATGAAAGTAAGAGGAGGAAAACAGACGCAGAGAATGGATCAAAC 766
Query 769 TGTATTTCCGAGAATTCATTTGAAAAGGTGTATGAACCATGCATCTTTTCAGTTCATTGC 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TGTATTTCCGAGAATTCATTTGAAAAGGTGTATGAACCATGCATCTTTTCAGTTCATTGC 826
Query 829 AACAGGATGCCTATCTTTTTTAGTGGGAGATACTTCAAATACTCCAGAAATGTTAGTCAA 888
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 827 AACAGGATGCCTATCTTTTTTAGTGGGAGGTACTTCAAATACTCCAGAAATGTTAGTCAA 886
Query 889 TCACGATGGATTATTGATGATGAAAGAATGGGAGAAGCGTCTGTTGAGGAGATAATTGGT 948
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 887 TCACGATGGATTATTGATGATGAAAGAATGGGGGAAGCGTCTGTTGAGGAGATACTTGGT 946
Query 949 GGAAACATTCTTCCAGCATGCCTTGGGGATTCCTACAAGTTCCATGCAGCTGGCAGAGAA 1008
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 947 GGAAACATTCTTCCAGCATGCCTTGGGGATTCCTACAAGTTCCATGCTGCTGGCAGAGAA 1006
Query 1009 GATATTGATGTACGAATGTTGGGTTCAGGTAGACCTTTCTTGATCGAGGTTCAGAATTCT 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 GATATTGATGTACGAATGTTGGGTTCAGGTAGACCTTTCTTGATCGAGGTTCAGAATTCT 1066
Query 1069 CGCCAGTTGCCGTCTGAACAATCATTGAAGGAAGTTGAAGAAAAGATAAACAAGTCAGAG 1128
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 CGCCAGTTACCGTCTGAACAATCATTGAAGGAAGTTGAAGAAAAGATAAACAAGTCAGAG 1126
Query 1129 AAAAAACTA 1137
|||||||||
Sbjct 1127 AAAAAACTA 1135
Score = 710 bits (384), Expect = 0.0
Identities = 408/419 (97%), Gaps = 4/419 (1%)
Strand=Plus/Plus
Query 1138 TCAGTGTTGGGCAATGATGCGCTAGGGAGAAGCGGAG-A--A-AAGCAGTATGTTGCACT 1193
|||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||
Sbjct 1168 TCAGTGTTGGGCAATGATGCGCGAGGGAGAAGCGGAGAAGCAGAAGCAGTATGTTGCACT 1227
Query 1194 TGTATGGATTTCTCGTCCACTTGAAGAGAAAGACTTCAACTCAATTCCTTCCCTGAAAGA 1253
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1228 TGTATGGATTTCTCGTCCACTTGAAGAGAAAGACTTCAACTCAATTTCTTGCCTGAAAGA 1287
Query 1254 ATTGAAAATCTTGCAGAAGACACCAGTTAGAGTGCTTCACCGACGAAGTCCACTGGACCG 1313
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1288 ATTGAAAATCTTGCAGAAGACACCAGTAAGAGTGCTTCACCGACGAAGTCCACTGGACCG 1347
Query 1314 TGAAAAGATTATACATTGGATGAAAGTTGAAAAGATAAAAGGACACTCTAACTACTTTCT 1373
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1348 TGAAAAGATTATACATTGGATGAAAGTTGAAAAGATAAAAGGACACTCTCACTACTTTCT 1407
Query 1374 ATTGCATCTGTGCACCCAGGCTGGAACATACATCAAAGAGTTTGTTCATGGAGATCTTGG 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 ATTGCATCTGTGCACCCAGGCTGGAACATACATCAAAGAGTTTGTTCATGGAGATCTTGG 1467
Query 1434 TCGTACCACTCCCAGCATGGGATCAATTTTAGGGTGCAGAGCGGAGATAATACAACTAGA 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 TCGTACCACTCCCAGCATGGGATCAATTTTAGGGTGCAGAGCGGAGATAATACAACTAGA 1527
Query 1494 TGTGACTGATGTGAAAATGGGCGACCCATGAATTGCCAAGTAAAAGCCCGATGCTCTTC 1552
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1528 TGTGACTGATGTGAAAATGGGCGACCCATGAATTGCCAAGTAAATGCCCGATGTTCTTC 1586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76606031670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5