BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921000
Length=1757
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20370.1 | Symbols: | Pseudouridine synthase family protein... 1301 0.0
AT1G20290.1 | Symbols: | SWI-SNF-related chromatin binding pro... 510 1e-143
AT1G76120.1 | Symbols: | Pseudouridine synthase family protein... 357 2e-97
> AT1G20370.1 | Symbols: | Pseudouridine synthase family protein
| chr1:7051577-7053641 REVERSE LENGTH=1972
Length=1972
Score = 1301 bits (704), Expect = 0.0
Identities = 796/841 (95%), Gaps = 3/841 (0%)
Strand=Plus/Plus
Query 11 AGTGGTGAAAATGGAGAATCAGGAGCCGGAAATCGAGAAATTGCCTCAAGACGATGTTCC 70
||||||||||||||||||||| ||||| || |||||||||||||||| ||||||||||||
Sbjct 44 AGTGGTGAAAATGGAGAATCAAGAGCCTGATATCGAGAAATTGCCTCGAGACGATGTTCC 103
Query 71 TGATCGAGAACCAGACCAGAAGAAGCTCAAGATTTCAACTACCGGCCAGGAAACTGATTC 130
|||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 104 TGATAGAGAACCAGACCATAAGAAGCTCAAGATTTCGACCACCGGCCAGGAAACTGATTC 163
Query 131 CTCGGCTGTTACCGCCGGCGGAAGCAACGTCGCTGAGCGTAGACCGCCGAAATACAGACG 190
||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 164 CTCGGCTGTTACCACCGGCGGAAGCAATGTCGCTGAGCGTAGAGCGCCGAAATACAGACG 223
Query 191 CCGGAAAGTCGCAATCATGTTTGCGTTTTGCGGAGTAGGCTATCAGGGAATGCAAAAGAA 250
|||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 224 CCGGAAAGTCGCAATCGTGTTTGCGTTCTGCGGAGTAGGGTATCAGGGAATGCAAAAGAA 283
Query 251 TCCCGGCGCCAAAACCATTGAAGGCGAGCTCGAAGAAGCGTTGTTCCATGCCGGAGCCGT 310
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 284 TCCCGGCGCCAAAACCATTGAAGGCGAGCTCGAAGAGGCTTTGTTCCATGCCGGAGCAGT 343
Query 311 ACCTGAGGCTGATCGGAACAAACCAAGAAATTACGAATGGGCACGATCCGCCCGTACCGA 370
|||||| |||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 344 ACCTGATGCTGATCGGAACAAACCAAGAAATTACGAATGGGCACGATCCGCTAGAACTGA 403
Query 371 TAAAGGAGTGAGTGCGGTGGGACAAGTGGTTTCTGGTCGTTTTTATGTTGATCCGCCTGG 430
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 404 TAAAGGAGTGAGTGCGGTGGGACAAGTGGTTTCTGGTCGTTTCTATGTTGATCCGCCTGG 463
Query 431 ATTTGTGGAGCGTCTCAATTCGAAGCTCCCTGATCAGATTCGTGTGTTTGGATACAAGCG 490
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 464 ATTTGTGGAGCGGCTCAATTCGAAGCTCCCTGATCAGATTCGTGTGTTTGGGTACAAGCG 523
Query 491 TGTTGCGCCGTCGTTTAGCTCCAAGAAATTATGTGATCGGAGGAGGTATGTGTATCTAAT 550
|||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 524 TGTTGCACCGTCGTTTAGCTCCAAAAAATTCTGTGATCGGAGGAGGTATGTGTATCTAAT 583
Query 551 TCCAGTTTTTGCTCTGGATCCATGCGTACATAGTGAAGCTGAGATGGTTAGAACGGATTT 610
|| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 584 CCCGGTTTTTGCTTTGGATCCATGCGTACATGGTGAAGCTGAGATGGTTAGAACGGATTT 643
Query 611 AGGTTACGAATATGTCAAATGTGTTGAGTGCTCTGAGAAAGGCTACAAGATTCCAGTTGG 670
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct 644 AGGTTACGAATATGTCAAATGTGTAGAGTGCTCTGAGAAAGGCTATAAGATTCCACTTGG 703
Query 671 TGTTATGGGTAAAGACACTGATTGT-G--ATACAAAATCATTGGAGATTCAGTCAGACAT 727
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 704 TGTTATGGGTAAAGACACTGATTGTTGTGATACAAAATCATTGGAGATTCAGTCAGACAT 763
Query 728 TTCGTCGAGCAACTTTGATGCATTAGGAACTGATGTCAAGTGTGAAACTTTGAGCTCTAG 787
||||||||||| || ||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 764 TTCGTCGAGCACCTGTGATGCAATAGGAGCTGATGTCAAGTGTGAAACTTTGAGCTCTAG 823
Query 788 TGTACCTAATGTAGAAAGTAACTTAAACTCAGAAGTTCTAGATGGGGCTGATGTATCTGC 847
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TGTACCTAGTGCAGAAAATAACTTAAACTCAGAAGTTCTAGATGGGGCTGATGTATCTGC 883
Query 848 T 848
|
Sbjct 884 T 884
Score = 1127 bits (610), Expect = 0.0
Identities = 776/848 (92%), Gaps = 43/848 (5%)
Strand=Plus/Plus
Query 919 AAGAATCGAATACTTTGGCTAAGGTAGAGATGAACAATGGGGGAGGAGGAGACATGAC-- 976
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 910 AAGAATCGAATACTTTGGCTAAGGTAGAGATGAACAATGGGGAAGGAGAAGACATGACTA 969
Query 977 --A--GAGAGCAAGTTCTGTTATGGAGAGAAGGAAATGGAGAGGTTTAACAGAATTCTAA 1032
| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 970 AAAGCGAGAGCAAGTTCTGTTATGGAGAGAAGGAAAAGGAGAGGTTTAACAGAATACTAA 1029
Query 1033 GCTGTTATGTTGGTTCACATAACTTCCACAACTTCACCACCAGAACAAAAGCAGCAGACC 1092
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1030 GCTATTATGTTGGTTCACATAACTTCCACAACTTCACCACCAGAACGAAAGCAGCAGACC 1089
Query 1093 CAGCTGCGAATCGCTACATTCTCTCTTTCAACGCAAACACAGTGATTAATCTCGATGGAA 1152
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1090 CAGCTGCGAATCGTTACATTCTCTCTTTCAATGCAAACACAGTGATTAATCTCGATGGAA 1149
Query 1153 AAGATTTTATCAAGTGTGAAGTTGTTGGACAGAGCTTCATGCTTCATCAAATCCGGAAAA 1212
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 AAGATTTTGTCAAATGTGAAGTTGTTGGACAGAGCTTCATGCTTCATCAAATCCGGAAAA 1209
Query 1213 TGATTGGACTTGCTGTTGC-AGTCATGAGGAACTATGCACCTGAATCACTGATCGAAACT 1271
||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| ||
Sbjct 1210 TGATTGGACTTGCTGTTGCTA-TCATGAGGAACTATGCTCCTGAATCACTGATCGAAGCT 1268
Query 1272 GCTTTCAAGAAGGATGTGAGAATAAATGTACCGATGGCGCCAGAAGTTGGATTATACCTT 1331
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 TCTTTCAAGAAGGATGTGAGAATAAATGTACCGATGGCGCCAGAAGTTGGATTATACCTT 1328
Query 1332 GATGAATGCTTCTTCACGTCTTACAACAAAAGGTTTAAAGGCAGTCATGAGGAGGTGTCA 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 GATGAATGCTTCTTCACGTCTTACAACAAAAGGTTTAAAGGCAGTCATGAGGAGGTGTCA 1388
Query 1392 ATGGAAGAGTACAAGGAAGTAGCTGAAGAATTCAAATGGAAGCATGTTTACTCACATATT 1451
||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||
Sbjct 1389 ATGGAAGAGTACAAGGAAGTAGCTGAAGAGTTCAAATGGAAGTATGTTTATTCACATATT 1448
Query 1452 GGCTCAGCTGAAGAAAAAGATGGAGCTGTGGCTATTTGGTTGCATTCTCTGAACCAGAGA 1511
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1449 GGCTCTGCTGAAGAAAAAGATGGAGCTGTGGCGATTTGGTTGCATTCTCTGAACCAGAGA 1508
Query 1512 AACTATCCTGATCTACGATGCAATGAATACAAACCGGATGAAGTCATTGTCTATAAGAAG 1571
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1509 AACTATCCTGATCTACGAAGCAATGAATACCAACCGGATGAAGTCATTGTCTATAAGAAG 1568
Query 1572 ATTGGTGAAGCCTCTGAAGAAAATATCCATGAAGAGAAAAT-TACAGTGAAAGAGAACAC 1630
| | || | ||||| | | || | ||||||| | || || ||| | |
Sbjct 1569 A-T--TG--G----TGAAG----CCT-C-TG-A-AGAAAATATCCA-TG-AAG-G----C 1604
Query 1631 TAATGGCACTGCAGAGCTATTCGTTGCCGATAAGGTGAATGATGAAACCTCTGAAGGAAC 1690
||| | || ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1605 -AAT-G--CT---GAGCTATTCGTTGTCGATAAGGTGAATGATGAAACCTCTGAAGGAAC 1657
Query 1691 AATTATGGAAGAGAGGACTACACTAGACGAGAAGGCAAC-GGAATGAAGCCGCTTTTTAT 1749
| ||||||||||||||| |||||||| ||||||||||| || ||||||||||||| ||
Sbjct 1658 GACTATGGAAGAGAGGACCACACTAGAGGAGAAGGCAACAGGG-TGAAGCCGCTTTT-AT 1715
Query 1750 CTACTGCG 1757
||||||||
Sbjct 1716 CTACTGCG 1723
> AT1G20290.1 | Symbols: | SWI-SNF-related chromatin binding protein
| chr1:7025548-7029698 REVERSE LENGTH=1149
Length=1149
Score = 510 bits (276), Expect = 1e-143
Identities = 302/314 (96%), Gaps = 3/314 (1%)
Strand=Plus/Plus
Query 1422 TTCAAATGGAAGCATGTTTACTCACATATTGGCTCAGCTGAAGAAAAAGATGGAGCTGTG 1481
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 295 TTCAAATGGAAGCATGTTTACTCTCATATTGGCTCAGCTGAAGAAAAAGATGGAGCTGTG 354
Query 1482 GCTATTTGGTTGCATTCTCTGAACCAGAGAAACTATCCTGATCTACGATGCAATGAATAC 1541
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 355 GCCATTTGGTTGCATTCTCTGAACCAGAGAAACTATCCTGATCTACGAAGCAATGAATGC 414
Query 1542 AAACCGG-ATGAAGTCATTGTCTATAAGAAGATTGGTGAAGCCTCTGAAGAAAATATCCA 1600
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AAA-CGGAATGAAGTCATTGTCTATAAGAAGATTGGTGAAGCCTCTGAAGAAAATATCCA 473
Query 1601 TGAAGAGAAAATTACAGTGAAAGAGAACACTAATGGCACTGCAGAGCTATTCGTTGCCGA 1660
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||
Sbjct 474 TGAAGAGAAAATTACAGTGAAAGAGAACACTAATGGCAATGCAGAGCTTTTCGTTGTCGA 533
Query 1661 TAAGGTGAATGATGAAACCTCTGAAGGAACAATTATGGAAGAGAGGACTACACTAGACGA 1720
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 534 TAAGGTGAATGATGAAACCTCTGAAGGAACGATTATGGAAGAGAGGACTACACTAGAGGA 593
Query 1721 GAAGGCAAC-GGAA 1733
||||||||| ||||
Sbjct 594 GAAGGCAACAGGAA 607
> AT1G76120.1 | Symbols: | Pseudouridine synthase family protein
| chr1:28558670-28560473 REVERSE LENGTH=1714
Length=1714
Score = 357 bits (193), Expect = 2e-97
Identities = 479/614 (78%), Gaps = 32/614 (5%)
Strand=Plus/Plus
Query 195 AAAGTCGCAATCATGTTTGCGTTTTGCGGAGTAGGCTATCAGGGAATGCAAAAGAATCCC 254
||||| || || || || |||||||| || ||||| || || ||||||||||||||||||
Sbjct 246 AAAGTTGCTATAATCTTCGCGTTTTGTGGTGTAGGATACCAAGGAATGCAAAAGAATCCC 305
Query 255 GGCGCCAAAACCATTGAAGGCGAGCTCGAAGAAGCGTTGTTCCATGCCGGAGCCGTACCT 314
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 306 GGCGCGAAAACCATTGAAGGCGAGCTCGAAGAAGCTTTGTTTCATGCCGGAGCTGTACCG 365
Query 315 GAGGCTGATCGGAA-CAAACCAAGAAAT-TACGAATGGGCACGATCCGCCCGTACCGATA 372
||| | || || ||| |||| || | ||||| | |||||||| || || || ||||
Sbjct 366 GAGTCC-ATTAGAGGCAAGCCAA-AACTATACGATTTCGCACGATCTGCACGGACAGATA 423
Query 373 AAGGAGTGAGTGCGGTGGGACAAGTGGTTTCTGGTCGTTTTTAT-GTTGATCCGCCTGGA 431
||||||| ||||| || |||||||| ||||| ||||| ||| || |||||||| | ||||
Sbjct 424 AAGGAGTTAGTGCTGTTGGACAAGTAGTTTCAGGTCGCTTT-ATCGTTGATCCACTTGGA 482
Query 432 TTTGTGGAGCGTCTCAATTCGAAGCTCCCTGATCAGATTCGTGTGTTTGGATACAAGCGT 491
|| ||| | ||||||||||| || |||||| |||||||| | | || || ||||||| |
Sbjct 483 TTCGTGAATCGTCTCAATTCAAATCTCCCTAATCAGATTAGAATCTTCGGTTACAAGCAT 542
Query 492 GTTGCGCCGTCGTTTAGCTCCAAGAAATTATGTGATCGGAGGAGGTATGTGTATCTAATT 551
|| |||||||||||||||||||||| || || ||||| || |||||||||||||| ||
Sbjct 543 GTAACGCCGTCGTTTAGCTCCAAGAAGTTTTGCGATCGAAGAAGGTATGTGTATCTGCTT 602
Query 552 CCAGTTTTTGCTCTGGATCCA-TG-CGTA-C---ATAGTGAAGCTG-AGATGGTTAGAAC 604
||||| |||||||| |||||| | || | | |||| ||| | | | |||| |||
Sbjct 603 CCAGTGTTTGCTCTTGATCCAATCTCGCATCGTGATAGAGAAACAGTA-ATGGCTAGTTT 661
Query 605 GGATTTAGGTTACGAATATGTCAAATG-TGTTGAGTGCTCTGAGAAAGG-C-TACAAGAT 661
|| | || | |||||||| || || | |||||||||| |||| ||| | || | |||
Sbjct 662 GGGTCCGGGAGAGGAATATGTTAAGTGCT-TTGAGTGCTCAGAGAGAGGTCGTA-A-GAT 718
Query 662 TCCAGTTGGTGTTATGGGTAAA-G-ACAC-TG--A--TTGTGATACAAAATCATTGGAGA 714
||| ||| || |||||||| | | | | | || || || |||||||||||
Sbjct 719 TCCTCCAGGTCTTGTGGGTAAATGGAAAGGTACCAACTT-TGGGACTAAATCATTGGATT 777
Query 715 TTCAGTCAGACATTTCGTCGAGCAACTTT-GATGCATTAGGAACTGATGTCAAG-TGTGA 772
||||||||||||||||||||| ||||| | | ||||||| ||| ||| ||||| | |||
Sbjct 778 TTCAGTCAGACATTTCGTCGAACAACTCTAG-TGCATTAAGAAGTGACATCAAGAT-TGA 835
Query 773 AACTTTGAGCTCTA 786
| ||||||| ||||
Sbjct 836 AGCTTTGAGTTCTA 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86897143395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5