BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921003
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20410.1 | Symbols: | Pseudouridine synthase family protein... 2495 0.0
> AT1G20410.1 | Symbols: | Pseudouridine synthase family protein
| chr1:7078898-7082547 REVERSE LENGTH=1709
Length=1709
Score = 2495 bits (1351), Expect = 0.0
Identities = 1476/1538 (96%), Gaps = 2/1538 (0%)
Strand=Plus/Plus
Query 4 CTCCAAATT-TCCGAAGCAAATGTCCGCCGACACAGGACCCGCCTCCGGCGACTCAGCTG 62
|||| |||| | | || || ||||||| ||| | || ||||| | ||| ||| ||||| |
Sbjct 25 CTCC-AATTATTCAAAACAGATGTCCGGCGAAAAAGAACCCGTCGCCGTCGAATCAGCCG 83
Query 63 GTTTGCCCAACGGCCTCGTAAGCCATGGTGACTCTAAGACACGGCGCGTATACGAAACAG 122
| |||||||||||||| ||||| |||||| |||| |||||||||||||||||||||||||
Sbjct 84 GCTTGCCCAACGGCCTAGTAAGTCATGGTAACTCCAAGACACGGCGCGTATACGAAACAG 143
Query 123 CTCGATCTCTGCATTCCGGTGCTGTGAAAGATCTTCTATCTCTCGGGGTCTGCGAGAGAT 182
|||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 144 CTCGATCTCTGCATACCGGTGCTGTGAAAGATCTTCTCTCTCTCGGGGTCTGTGAGAGAT 203
Query 183 GTATTTTCCGATTGGTAGCCGTCGAGGCTTTTGATTCCGATATTTCTTCAGTCTCGACTT 242
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 204 GTATTTTCCGATTGGTATCCGTCGAGGCTTTTGATTCCGATATTTCATCAGTCTCGACTT 263
Query 243 CAACTCTTCACAGTTGGCTCAAATCCGGTGATGGTGAAACTGGTTCATCGGAATCTAGCT 302
||||||| | ||| ||||||||||||||||||| ||||||| || |||||||||||||||
Sbjct 264 CAACTCTGCGCAGCTGGCTCAAATCCGGTGATGATGAAACTAGTGCATCGGAATCTAGCT 323
Query 303 GTTCCAGAATCTGCATTGTTTGTTTAGGTATATTGCAGTTCGTTTTTTCCGATGCCAAAA 362
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 324 GTTCCACAATCTGCATTGTTTGTTTAGGTATATTGCAGTTCGTTTTTTCCGATGTCAAAA 383
Query 363 AAGAGCTGGTGAAATCGGATTCTAGTAGTGATTACGTTTCAAGGATAACGGACTTGGTGA 422
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 384 AAGAGCTGGTGAAATCGGATTCTAGTAGTGATTACGTTGCAAGGATAACGGACTTGGTGA 443
Query 423 AGCAGGATCGTCATGAGTTCGATAGCTTTGGTCTTGAAGTCTCTGTGCCATCAACTATCA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 AGCAGGATCGTCATGAGTTCGATAGCTTTGGTCTTGAAGTCTCTGTGCCATCAACTATCA 503
Query 483 TGGAGAATGAACGTGCACTCTTGTCATACCTTAAAGGAAAGTATAGCACCGAAGTTTGGC 542
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 504 TGGAGAATGAACGTGCACTCTTGTCATACCTTAAAGGAAAGTACAGCACCGAAGTTTGGC 563
Query 543 TGCAACGCGACAAATTTTCTGTAAAGGATGCTTTGAAAGTTCTACTCTTGGATCAACTTA 602
|||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 564 TGCAGCGCGATAAAATTTCTGTAAAGGATGCCTTGAAAGTTCTACTCTTGGATCAACTTA 623
Query 603 AAGCATCGTTGGGCGCTGAATCAGATTCAAGCTCTTTTCACATCCGTTTGACATACACTA 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 AAGCATCGTTGGGCGCTGAATCAGATTCAAGCTCTTTTCACATCCGTTTGACATACACTA 683
Query 663 AAGCATCAGACGAGGCTCAGGGTGCTTCTGAAACAACGCATGAAAGTAAGAGGAGGAAAA 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 AAGCATCAGACGAGGCTCAGGGTGCTTCTGAAACAACGCATGAAAGTAAGAGGAGGAAAA 743
Query 723 CAGACGCAGAGAATGGATCAAACTGTATTTCCGAGAATTCATTTGAAAAGGTGTATGAAC 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 CAGACGCAGAGAATGGATCAAACTGTATTTCCGAGAATTCATTTGAAAAGGTGTATGAAC 803
Query 783 CATGCATCTTTTCAGTTCATTGCAACAGGATGCCTATCTTTTTTAGTGGGAGATACTTTA 842
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 804 CATGCATCTTTTCAGTTCATTGCAACAGGATGCCTATCTTTTTTAGTGGGAGGTACTTCA 863
Query 843 AATACTCCAGAAATGTTAGTCAATCCCGATGGATTATTGATGATGAAAGAATGGGCGAAG 902
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 864 AATACTCCAGAAATGTTAGTCAATCACGATGGATTATTGATGATGAAAGAATGGGGGAAG 923
Query 903 CGTCTGTTGAGGAGATACTTGGCGGAAACATTCTTCCAGCATGCCTTGGGGATTCGTACA 962
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 924 CGTCTGTTGAGGAGATACTTGGTGGAAACATTCTTCCAGCATGCCTTGGGGATTCCTACA 983
Query 963 AGTTCCACGCAGCTGGCAGAGAAGATATTGATGTACGAATGTTGGGTTCAGGTAGACCTT 1022
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 AGTTCCATGCTGCTGGCAGAGAAGATATTGATGTACGAATGTTGGGTTCAGGTAGACCTT 1043
Query 1023 TCTTGATCGAGGTTCAGAATTCTCGCCAGTGCCCGTCTGAACAATCATTGAAGGAAGTCG 1082
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1044 TCTTGATCGAGGTTCAGAATTCTCGCCAGTTACCGTCTGAACAATCATTGAAGGAAGTTG 1103
Query 1083 AAGAAAAGATAAACAACTCAGAGAAAAAACTAGTCGGAGTAAAAGACCTTAAATGTATCG 1142
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 AAGAAAAGATAAACAAGTCAGAGAAAAAACTAGTCGGAGTAAAAGACCTTAAATGTATCG 1163
Query 1143 GAAGTCAGTGTTGGGCAATGATGCGTGAAGGAGAAGCAGAGAAGCAGAAGCAGTATGTTG 1202
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 1164 GAAGTCAGTGTTGGGCAATGATGCGCGAGGGAGAAGCGGAGAAGCAGAAGCAGTATGTTG 1223
Query 1203 CACTTGTATGGATTTCTCGTCCACTTGAAGAGAAAGACTTCAACTCAGTTTCTTCCCTGA 1262
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1224 CACTTGTATGGATTTCTCGTCCACTTGAAGAGAAAGACTTCAACTCAATTTCTTGCCTGA 1283
Query 1263 AAGAATTGAAAATCTTGCAGAAGACACCAGTAAGAGTGCTTCACCGACGAAGTCCATTGG 1322
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1284 AAGAATTGAAAATCTTGCAGAAGACACCAGTAAGAGTGCTTCACCGACGAAGTCCACTGG 1343
Query 1323 ATCGTGAAAAGATTATACATTGGATGAAAATTGAAAAGATAAAAGGACACGCTCACTACT 1382
| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1344 ACCGTGAAAAGATTATACATTGGATGAAAGTTGAAAAGATAAAAGGACACTCTCACTACT 1403
Query 1383 TTCTATTGCATCTGTGCACCCAGGCTGGAACATACATCAAAGAATTTGTTCATGGAGATC 1442
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1404 TTCTATTGCATCTGTGCACCCAGGCTGGAACATACATCAAAGAGTTTGTTCATGGAGATC 1463
Query 1443 TTGGTCGTACCACTCCCAGCATGGGATCAATTTTAGGGTGCAGAGCGGAGATAATACAAC 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 TTGGTCGTACCACTCCCAGCATGGGATCAATTTTAGGGTGCAGAGCGGAGATAATACAAC 1523
Query 1503 TAGATGTGACTGATGTGAAAATGGGCGACTCATGAATT 1540
||||||||||||||||||||||||||||| ||||||||
Sbjct 1524 TAGATGTGACTGATGTGAAAATGGGCGACCCATGAATT 1561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5