BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921006
Length=227
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01060.1 | Symbols: | Protein kinase protein with tetratric... 291 2e-78
> AT5G01060.1 | Symbols: | Protein kinase protein with tetratricopeptide
repeat domain | chr5:22740-24847 FORWARD LENGTH=1500
Length=1500
Score = 291 bits (157), Expect = 2e-78
Identities = 193/210 (92%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 17 AGTTCATGAGTGGAGCTCCTACAATGTCATCAACAGTATTGGCAAGAAGGTGTCTTTGTT 76
||||||||| |||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 1268 AGTTCATGACTGGAGCTCCTACGGTATCACCAACAGTATTGGCAAGAAGGTGTCTTTGTT 1327
Query 77 ACCTAATGACTGAAATGTTCAGTGAGGCTCTAAGCGATGCGATGCAAGCGCAAGTAGCTT 136
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1328 ACCTAATGACTGAAATGTTCAGCGAGGCTCTAAGCGATGCGATGCAAGCGCAAGTAGCTT 1387
Query 137 CACTGGAATGGCCAATAATCCCTCTCTTATTTACATGTGGTTTGTCTCTTGAAGCTCGAG 196
||| |||||||||||| ||| ||| ||| ||||| | || ||||||||| ||||| |||
Sbjct 1388 CACCGGAATGGCCAAT--TCC-TCT-TTACTTACAAGCGGCTTGTCTCTTCAAGCTAGAG 1443
Query 197 ATGGAAGCTGAAGCTAAAGAAGCACTTAGA 226
||||||||||||||||||||||||||||||
Sbjct 1444 ATGGAAGCTGAAGCTAAAGAAGCACTTAGA 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10204353047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5