BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921008
Length=851
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20440.1 | Symbols: COR47, RD17, AtCOR47 | cold-regulated 47... 1290 0.0
> AT1G20440.1 | Symbols: COR47, RD17, AtCOR47 | cold-regulated
47 | chr1:7084409-7085772 REVERSE LENGTH=1219
Length=1219
Score = 1290 bits (698), Expect = 0.0
Identities = 803/854 (94%), Gaps = 5/854 (1%)
Strand=Plus/Plus
Query 2 AATCGAATCAAGATTAACTATGGCTGAGGAGTACAAGAACAACGTTCCCGAGCACGAGAC 61
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 90 AATCAAATCAAGATTAACTATGGCTGAGGAGTACAAGAACAACGTTCCCGAGCACGAGAC 149
Query 62 ACCAAAGGTCGCAACAGAGGAATCACCAGCGACGACTACAGAGGTTACGGATCGTGGATT 121
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 150 ACCAACGGTCGCAACAGAGGAATCACCAGCGACGACAACAGAGGTTACGGATCGTGGATT 209
Query 122 GTTTGATTTCTTGGGGAAGAAGGAAGAGGAAGTGAAACCTCAAGAGACGACGACGCTCGA 181
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 210 GTTTGATTTCTTGGGGAAGAAGGAAGAGGAAGTGAAACCTCAAGAGACAACGACGCTCGA 269
Query 182 GCCTGAGTTCGATCACAAGGCTCAGAACTCTGAACCGGAGTTAGCTGCGGAGCACGAGGA 241
| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 270 GTCTGAGTTCGATCATAAGGCTCAGATCTCTGAACCGGAGTTAGCTGCGGAGCACGAGGA 329
Query 242 AGTGAAGGAGAACAAGATTACTCTCCTTGAAGAGCTTCAAGAGAAGACTGAGGAAGATGA 301
|||||||||||||||||||||||| || || ||||||||||| ||||| |||||||||||
Sbjct 330 AGTGAAGGAGAACAAGATTACTCTGCTAGAGGAGCTTCAAGAAAAGACCGAGGAAGATGA 389
Query 302 GGAGAACAAGCCTAGTGTCATCGAAAAGCTTCACCGATCCAACGGCTCTGCTTCCTCTTC 361
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 390 GGAGAACAAGCCTAGTGTCATCGAAAAGCTTCACCGATCCAACAGCTCTTCTTCCTCTTC 449
Query 362 GAGCGATgaagaaggtgaggagaagaaggagaagaagaaga---tcgttgaaggagagga 418
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 450 GAGCGATGAAGAAGGTGAGGAAAAGAAGGAGAAGAAGAAGAAGATCGTTGAAGGAGAGGA 509
Query 419 agagaagaaaggactagcggagaagatcaaggagaagCTTCCAGGCCACCACGACAAGAA 478
||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||
Sbjct 510 AGATAAGAAAGGACTAGTGGAGAAGATCAAGGAGAAGCTCCCAGGACACCACGACAAGAC 569
Query 479 ACCAGAGGATGATGTACCAGTTTCCACCACCATCCAGGTACCAGTGTCGGAGAGTGTGGT 538
| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 570 AGCAGAGGATGATGTACCAGTTTCCACTACCATCCCGGTACCAGTGTCGGAGAGTGTGGT 629
Query 539 GGAGCATGACCAACCCGAGGAAGAGAAGAAAGGACCAGT-GCAGAAGATCAAGGAGAAGC 597
|||||||||||| ||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 630 GGAGCATGACCATCCCGAGGAAGAGAAGAAAGGATTAGTTG-AGAAGATCAAGGAGAAGC 688
Query 598 TTCCTGGCCACCACGACAAGACTGCAGAGGATTCACCAGCTGTCACCAGCACGCCGTTGG 657
||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||
Sbjct 689 TTCCTGGTCACCACGACGAGAAAGCAGAGGATTCACCAGCTGTCACGTCCACGCCGTTGG 748
Query 658 TTGTAACGGAGCATCCAGTGGAGCCTACGACGGAGCATCCGGAGGAGCATCCGGAGGAGA 717
|||||||||||||||| ||||||||||||||||||| ||| | ||| |||||||||||||
Sbjct 749 TTGTAACGGAGCATCCGGTGGAGCCTACGACGGAGCTTCCAGTGGAACATCCGGAGGAGA 808
Query 718 AGAAGGGCATTTTGGGAAAGATTAAAGAGAAGCTTCCAGGTTATCATGCCAAGACCACTG 777
||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 809 AGAAGGGGATTTTGGAAAAGATCAAAGAGAAGCTTCCAGGTTATCATGCCAAGACCACTG 868
Query 778 AAGAGGAAGAGAAGAAAGTAAAAGAGACTGATGCTTAAGAAAAATGGTTAAAGAATGAAT 837
||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||||||
Sbjct 869 AAGAGGAAGTGAAGAAAGAAAAAGAGTCTGATGATTAAGCAAAATGGTTAAAGAATGAAT 928
Query 838 AATGATGTGGGAGT 851
||||||||||||||
Sbjct 929 AATGATGTGGGAGT 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41493405422
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5