BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921010

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G20460.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   566    6e-161
  AT1G76185.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   320    5e-87 


> AT1G20460.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G76185.1); 
Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7091361-7092993 
FORWARD LENGTH=465
Length=465

 Score =  566 bits (306),  Expect = 6e-161
 Identities = 332/344 (97%), Gaps = 3/344 (1%)
 Strand=Plus/Plus

Query  1    AATCGCAGCATAGGAAAGCGATGATTACAAGATCGAATCTAGCAGAGCAGCTGAGGGAAT  60
            |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  125  AATCGCTGCATAGGAAAGCGATGATAACAAGATCGAATCTAGCAGAGCAGCTGAGGGAAT  184

Query  61   ATCAGATTCGATCTAAGCATGATTGGGCTTCTGTCTCTTTCTTCTCGTCGACCTCGAGTT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  185  ATCAGATTCGATCTAAGCATGATTGGGCTTCTGTCTCTTTCTTCTCGTCGACCTCGAATT  244

Query  121  TTTCTTCTTCCTCTAGGGTGGATGTTGTAGTCTTTGTCATCTGGGAGCTAGTCATCTTAG  180
            ||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  245  TTTCTTC-T--TCTAGGGTGGATGTTGTAGTCTTTGTCATCTGGGAGCTAGTCATCTTAG  301

Query  181  CATTCTTCGTGTTTTCAGCGGTTTCCTTGTACTTCAAGCGGTTACAACTCGCATTCATCT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  302  CATTCTTCGTGTTTTCAGCGGTTTCCTTGTACTTCAAGCGGTTACAACTCGCATTCATCT  361

Query  241  TGATATGTGTCACGTTGATGCTACTAATTTGCATGAAGGTCACAAAGCAAGTGAGGTTAG  300
            || |||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct  362  TGGTATGTGTCACTTTGCTGCTACTAATTTGCATGAAGGTCACAAAGCAAGTGAGATTAG  421

Query  301  CCAGGAAGAAGAAGCGAAGGATGCTTCTTCCGCTATCTATGTAA  344
            ||||||||||||||||||||||||||||||| || |||||||||
Sbjct  422  CCAGGAAGAAGAAGCGAAGGATGCTTCTTCCACTCTCTATGTAA  465


> AT1G76185.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G20460.1); 
Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:28590325-28591518 
FORWARD LENGTH=854
Length=854

 Score =  320 bits (173),  Expect = 5e-87
 Identities = 281/333 (84%), Gaps = 7/333 (2%)
 Strand=Plus/Plus

Query  16   AAGCGATGATTACAAGATCGAATCTAGCAGAGCAGCTGAGGGAATATCAGATTCGATCTA  75
            |||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |||| |
Sbjct  168  AAGCGATGATAACAAGATCGAATCTAGCAGAACAGCTCAGGGAATATCAGATTAGATCAA  227

Query  76   AGCATGATTGGGCTTCTGTCTCTTTCTTCTCGTCGACCTCGAGTTTTTCTTCTTCCTCTA  135
            ||||||||||||| || || ||||||||||| || ||||| |   |||| |||||||| |
Sbjct  228  AGCATGATTGGGCCTCCGTTTCTTTCTTCTCTTCCACCTCCA--ATTTC-TCTTCCTCCA  284

Query  136  GGGTGGATGTTGTAGTCTTTGTCATCTGGGAGCTAGTCATCTTAGCATTCTTCGTGTTTT  195
            |||| |||||||||||||||||||| ||||| ||||| || |||||| || | |||||||
Sbjct  285  GGGTTGATGTTGTAGTCTTTGTCATATGGGAACTAGTGATGTTAGCACTCGTGGTGTTTT  344

Query  196  CAGCGGTTTCCTTGTACTTCAAGCGGTTACAACTCGCATTCATCTTGATATGTGTCACGT  255
            |||| || ||||||||||||| |||||| ||||| || || ||| || | |||||||| |
Sbjct  345  CAGCTGTATCCTTGTACTTCAGGCGGTTGCAACTTGCTTTTATCCTGCTTTGTGTCACCT  404

Query  256  TGA-TGCTACTAATTTGCATGAAGGTCACAAAGCAAGTGAGGTTA-GCCAGGAAGAAGAA  313
            | | |  ||||  | || |||||  ||||||||||||||| |  | || |||||||||||
Sbjct  405  T-ACTATTACTCCTCTGTATGAAAATCACAAAGCAAGTGA-GACATGCTAGGAAGAAGAA  462

Query  314  GCGAAGGATGCTTCTTCCGCTATCTATGTAAAG  346
            |||||||||||||||||| || |||||||||||
Sbjct  463  GCGAAGGATGCTTCTTCCTCTCTCTATGTAAAG  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17091034660


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5