BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921022
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20575.1 | Symbols: | Nucleotide-diphospho-sugar transferas... 1347 0.0
> AT1G20575.1 | Symbols: | Nucleotide-diphospho-sugar transferases
superfamily protein | chr1:7126772-7128745 REVERSE LENGTH=1024
Length=1024
Score = 1347 bits (729), Expect = 0.0
Identities = 772/793 (97%), Gaps = 1/793 (0%)
Strand=Plus/Plus
Query 1 GAACCACCGTTGCGAAAACTCGCCGGAAGATATGGCGGACGAGATGGAGAACAAAGGAGA 60
||||||||||| | |||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 38 GAACCACCGTTACCAAAACTCGCCGGAAGAGATGGCGGACGAGATGGAGACCAAAGGAGA 97
Query 61 GAAAAAGTTCAAGTATAGCATAATCATTCCTACCTACAACGAACGCCTCAATATCGCTAT 120
||| |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 98 GAAGAAGTACAAGTATAGCATAATCATTCCTACCTACAACGAGCGCCTCAACATCGCTAT 157
Query 121 CATAGTCTACCTGATTTTCAAGCATCTCCGGGACGTTGATTTTGAGATAATTGTTGTGGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 CATAGTCTACCTGATTTTCAAGCATCTCCGGGACGTTGATTTTGAGATAATTGTTGTGGA 217
Query 181 TGATGGGAGTCCTGATGGCACACAAGAAATTGTCAAGCAACTGCAGCAATTGTATGGTGA 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 218 TGATGGGAGTCCTGATGGCACACAGGAAATTGTCAAGCAACTGCAGCAATTGTATGGTGA 277
Query 241 AGACCGTATCCTTTTAAGAGCTAGAGCCAAGAAGCTTGGTCTGGGAACTGCATATATCCA 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 278 AGACCGTATCCTTTTAAGAGCTAGAGCCAAGAAGCTTGGTTTGGGAACTGCATATATTCA 337
Query 301 TGGTTTGAAGCATGCTACGGGTGATTTCGTCGTAATCATGGATGCTGATCTTTCACATCA 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 338 TGGTTTGAAGCATGCTACGGGTGATTTCGTCGTGATCATGGATGCTGATCTTTCACATCA 397
Query 361 TCCAAAATACTTACCAAGTTTCATCAAGAAACAACTAGAGACAAATGCAAGTATAGTAAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 TCCAAAATACTTACCAAGTTTCATCAAGAAACAACTAGAGACAAATGCAAGTATAGTAAC 457
Query 421 CGGTACACGATATGTAAAAGGTGGTGGTGTACATGGGTGGAATCTTATGCGGAAACTCAC 480
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 458 TGGTACACGATATGTAAAAGGTGGTGGTGTACACGGGTGGAATCTTATGCGGAAACTCAC 517
Query 481 TAGTAGAGGAGCAAATGTGCTAGCTCAAACACTTTTATGGCCTGGTGTATCTGATTTAAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 TAGTAGAGGAGCAAATGTGCTAGCTCAAACACTTTTATGGCCTGGTGTATCTGATTTAAC 577
Query 541 CGGATCATTCCGGCTATACAAGAAATCGGTGCTTGAAGACGTGATTAGCTCATGTGTAAG 600
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 578 AGGATCATTCCGGCTATACAAGAAATCGGCGCTTGAAGACGTGATTAGCTCATGTGTGAG 637
Query 601 TAAAGGGTATGTCTTTCAGATGGAAATGATTGTTCGTGCAACCAGAAAAGGATACCATAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 TAAAGGGTATGTCTTTCAGATGGAAATGATTGTTCGTGCAACCAGAAAAGGATACCATAT 697
Query 661 TGAAGAGGTACCGATCACTTTTGTTGACAGAGTCTTTGGAACTTCGAAACTCGGAGGATC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 TGAAGAGGTACCGATCACTTTTGTTGACAGAGTCTTTGGAACTTCGAAACTCGGAGGATC 757
Query 721 TGAAATAGTTGAATATCTAAAAGGCCTCGTCTATCTCCTGCTTACGACTTA-GAGACACC 779
||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 758 TGAAATAGTGGAATATCTAAAAGGCCTCGTCTATCTCCTGCTTACAACTTAAGACACACC 817
Query 780 AAGCAACTCAACA 792
|||||||||||||
Sbjct 818 AAGCAACTCAACA 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5