BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921039
Length=3556
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20720.1 | Symbols: | RAD3-like DNA-binding helicase protei... 4224 0.0
AT1G20750.1 | Symbols: | RAD3-like DNA-binding helicase protei... 1613 0.0
AT2G05635.1 | Symbols: | DNA repair DEAD helicase RAD3/XP-D su... 481 2e-134
> AT1G20720.1 | Symbols: | RAD3-like DNA-binding helicase protein
| chr1:7185658-7192794 REVERSE LENGTH=3528
Length=3528
Score = 4224 bits (2287), Expect = 0.0
Identities = 2488/2583 (96%), Gaps = 21/2583 (1%)
Strand=Plus/Plus
Query 963 AAATTACAGAATGAACTAGAACAGATGAGCTTGGCGCAGCCAATGATTTATCAACCCTTG 1022
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 958 AAATTACAGAATGAACTAGAACAGATGAGCGTGGCGCAGCCAATGATTTATCAACCCTTG 1017
Query 1023 TGTGAAGTAGTAGAGGGACTAATAAGCTGGATTGGAAGAAAAAAGGACTCATTAGCAAAA 1082
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TGTGAAGTAGTAGAGGGACTGATAAGCTGGATTGGAAGAAAAAAGGACTCATTAGCAAAA 1077
Query 1083 CGTGATTTTCAGCATTATTTCTCTAGCTGGACTGGAGACAAAGCTTTAAGAGAGCTTGAG 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CGTGATTTTCAGCATTATTTCTCTAGCTGGACTGGAGACAAAGCTTTAAGAGAGCTTGAG 1137
Query 1143 GAATCTAATATCACTCGTGAATGCTTCCCAATCTTATTGGAATGCTTTACAAAGGCTATC 1202
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1138 GAATCTAATATCACTCGTGAATGCTTCCCGATCTTATTGGAATGCTTTACAAAGGCTATC 1197
Query 1203 AGAACATCAAAGGAGGCAGAAATGGAATCAGATATGCTTTATTTGAGCGGGATATCTGTC 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AGAACATCAAAGGAGGCAGAAATGGAATCAGATATGCTTTATTTGAGCGGGATATCTGTC 1257
Query 1263 TTGACACTAGAAGAGTTGTTCTCTTCACTTACATACTTCTTTTCAAGAAATGGAAGTCAC 1322
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1258 TTGACACTAGAAGAGTTGTTCTCTTCACTAACGTACTTCTTTTCAAGAAATGGAAGTCAC 1317
Query 1323 ATCTTAGATTACCAACTGGGTTTACAACGCTCTACTAAAAGAGGAGATCCTTCTCGTACC 1382
||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||
Sbjct 1318 ATCTTAGATTACCAACTGGGTTTGCAACGTTCTACTAAAAGAGGAGATCCTTCTGGTACC 1377
Query 1383 TGGACGCATACTTTCAGTTTGTGGTGCATGAATCCTGCTGTTGTTTTCAAAGACTTAGCT 1442
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TGGACGCATACTTTCAGCTTGTGGTGCATGAATCCTGCTGTTGTTTTCAAAGACTTAGCT 1437
Query 1443 GATATATCTTTATCCATCATTTTAACATCTGGGACTTTGTCACCAATGAATTCTTTCTCA 1502
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 GATATATCATTATCCGTCATTTTAACATCTGGGACTTTGTCACCAATGAATTCTTTCTCA 1497
Query 1503 TCTGAACTTGGGATGCAGTTTGGCACTTCTTTAGAGGCTCCACATGTTATTGATCCTAAT 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TCTGAACTTGGGATGCAGTTTGGCACTTCTTTAGAGGCTCCACATGTTATTGATCCTAAT 1557
Query 1563 ATGCAGGTGTGGGCTGGCGCAATCTCCAATGGTCCTAGTAATTATCCTCTAAATGCAAGT 1622
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 ATGCAGGTGTGGGCGGGTGCAATCTCCAATGGTCCTAGTAATTATCCTCTAAATGCAAGT 1617
Query 1623 TATAAAACAGCTGATACATATTCATTCCAGGATGCTCTTGGGAAATCATTGGAAGAAATC 1682
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1618 TATAAAACAGCTGATGCATATTCATTCCAGGATGCTCTGGGGAAATCATTGGAAGAAATC 1677
Query 1683 TGCACTATTGTACCAGGAGGCTCTC-TGATATTCTTTCCAAGCTATAAGTTGATGGAAAA 1741
||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||
Sbjct 1678 TGCACTATTGTACCAGGTGGCTCTCTTG-TATTCTTTCCAAGCTATAAGTTGATGGAAAA 1736
Query 1742 ACTCTGCACGCGTTGGCGTGAAACTGGGTAGTGGTCTCGGCTCTGCTTGAAAAAGGACCT 1801
|||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1737 ACTCTGCATGCGTTGGCGTGAAACTGAGCAGTGGTCTCGGCTCTGCTTGAAAAAGGACCT 1796
Query 1802 TTTTGTTGAACCAAGAGGAGGCGCCCAGGACGAATTTGATTCTGTTCTGAAGGGATATTA 1861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 TTTTGTTGAACCAAGAGGAGGCGCCCAGGACGAATTTGATTCTGTTCTGAAGGGATATTA 1856
Query 1862 TGATTCTATACGCGGGAAGAATAAATTAGTTGGAAGAAATAGAAGAGCTAAGAAAGCAGG 1921
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1857 TGATTCTATACGCGGGAAGAATAAAATAATTGGAAGAAATAGAAGAGCTAAGAAAGCAGG 1916
Query 1922 GCCTATTAAAACTGAGACTCAAGATGATTCCAAGAAGGGAGCTGCATTTCTTGCAGTATG 1981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1917 GCCTATTAAAACTGAGACTCAAGATGATTCCAAGAAGGGAGCTGCATTTCTTGCAGTGTG 1976
Query 1982 TAGGGGAAAGGTTTCAGAAGGGATTGACTTTGCTGATGACAACGCCAGGGCAGTGATAAT 2041
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 TAGAGGAAAGGTTTCAGAAGGGATTGACTTTGCTGATGACAACGCCAGGGCAGTGATAAT 2036
Query 2042 TGTTGGCATTCCATTTCCAAACTTACATGATATTCAAGTCGGACTGAAGAAAAAATATAA 2101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 TGTTGGCATTCCATTTCCAAACTTACATGATATTCAAGTCGGACTGAAGAAAAAATATAA 2096
Query 2102 TGATACCTACAAGTCATCTAAAAGTCTTCTTGGAGGGAGTGAATGGTATTGCCAACAGGC 2161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 TGATACCTACAAGTCATCTAAAAGTCTTCTTGGAGGGAGTGAATGGTATTGCCAACAGGC 2156
Query 2162 CTATCGTGCTCTAAATCAAGCTGCAGGAAGATGTATCCGGCATAGGTTTGATTATGGTGC 2221
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2157 CTATCGTGCGCTAAATCAAGCTGCAGGACGATGTATCCGGCATAGGTTTGATTATGGTGC 2216
Query 2222 CATCATATTCTTAGATGAGCGATACAAAGAGCAAAGGAACAGAGCGTCTATTTCAAAGTG 2281
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 2217 CATCATATTCTTAGATGAGCGATACAAAGAACAAAGGAACAGAGCGTCTATTTCAAAATG 2276
Query 2282 GCTAAGGCAGTCTATCAAAGTGTATGATAATTTTGAAGCATCTATGGAAGGGTTGAGATA 2341
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2277 GCTAAGGCAGTCTATCAAAGTGTATGATAATTTTGAAGCATCTATGGAAGGCTTGAGATC 2336
Query 2342 TTTTTTCAACAGTGTCAAGGAGCAAGTTGACAGTAAGATGTTAGGGTCCCAGGACGATAC 2401
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 2337 TTTTTTCAACAGTGTCAAGGAGCAAGTTGACAGTAAGATGTTAGGGTCCCAGGAGGATTC 2396
Query 2402 TGTTGAGAAGAACTTTTCCTTGGAAAACCAAAGCAAAGAATACAGAAGGAAGGAAAATCA 2461
|||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||
Sbjct 2397 TGTTGAGAAGAACTTTTCCTCGGAAAAACAAAGCAAAGAATTCAGAAGGAAGGAAAATCA 2456
Query 2462 GATTCAGAACAAATCTAGTCAAGTGGAACCAAAAGTGGAGGACGTGGAGGACTACACAAA 2521
||||||||||||||||||||||||||||||||||||||||||| | | | ||| ||
Sbjct 2457 GATTCAGAACAAATCTAGTCAAGTGGAACCAAAAGTGGAGGAC-T--A---C-ACA-AA- 2507
Query 2522 TTCGAATCCAAAATATCCTTTTATAG-ATGAAAGCAAAGCCTTTGGGGATCACAGAGATG 2580
||||||||||||||||| |||||| | | |||||||||||||||||| ||||||||||||
Sbjct 2508 TTCGAATCCAAAATATCATTTTAT-GTACGAAAGCAAAGCCTTTGGGTATCACAGAGATG 2566
Query 2581 TGAAACCAAAAATAGCTGAAGATTTGAGATACATGGGGCATTCGGCGCAGACATTTGTTC 2640
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2567 TGAAACCAAAAATAGCTGAAGATTTGAGATCCATGGGGCATTCGGCGCAGACATTTGTTC 2626
Query 2641 AAGTTAAAGAGGAAGTTGAATGCTGTAGAGAAGTTATTGACCTTGAGTGCGGTGTCCAAC 2700
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2627 AAGTTAAAGAGGAAGCTGAATGCTGTAGAGAAGTTATTGACCTTGAGTGCGGTGTCCAAC 2686
Query 2701 CTGAGCCTGGGTATTGTGAGGTATCATCGGTGACCAACTGTGATGAAGATCTAGAAACAT 2760
|||| | ||| || |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2687 CTGATCTTGGTTACTGTGAGGTATCATCGGTGACCAACTGTGATGAAGCTCCAGAAACAT 2746
Query 2761 CTTTTGTCAAGGAAAGC-TCTGGTATGATCAATGGTATTTCAGTTGCCAGTCCATGTTCT 2819
|||||||| |||||| | |||||||||||||||||||||||||| |||||||||||||||
Sbjct 2747 CTTTTGTCCAGGAAA-CATCTGGTATGATCAATGGTATTTCAGTAGCCAGTCCATGTTCT 2805
Query 2820 TGCTCGGTGAATGAAAGCTCTAGTCCAACAACAATAGGTCGGAGATCTCCGAGGTCTCCT 2879
|||||| |||||||||||||||||||| ||||| |||||| |||||||||| ||||||||
Sbjct 2806 TGCTCGATGAATGAAAGCTCTAGTCCAGCAACAGTAGGTCTGAGATCTCCGGGGTCTCCT 2865
Query 2880 GATCAATTATTAAAGCAGCATATATCTACTCCAAATTTCAGAAAATCTCCTCTTGGAGCT 2939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2866 GATCAATTATTAAAGCAGCATATATCTACTCCAAATTTCAGAAAATCTCCTCTTGGAACC 2925
Query 2940 GAGTCGTCCGTAGTAGCAACTTCTGAGAGATATTCCTTTGGTGACACCCGTAGTTTGACT 2999
|||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 2926 GAGTCGTCTGTAGTAGCAACTTCTGAGAGATATTCATTTGGTGGCACCCGTAGTTTGACT 2985
Query 3000 CTAGAAGCAGAGTCATCTTTCAACATGAGTGTTAATTCTCAAGCTTTGAAGCGAAGAAAG 3059
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2986 CTAGAAGCAGAGTCATCTTTCAACATGAGCGTTAATTCTCAAGCTTTGAAGCGAAGAAAG 3045
Query 3060 TTTACCAGCTCTCCTGTCATTGACCTTGAAGACGAAAACAGCGATGCTCCTA-----A-T 3113
||||||||||||||||||||||||||||||| ||||||||| |||||||||| | |
Sbjct 3046 TTTACCAGCTCTCCTGTCATTGACCTTGAAGTCGAAAACAGTGATGCTCCTAGGCCTAAT 3105
Query 3114 TGCTCAATGGTTAATCAGAGACTCTGCAGAAAATTTGAAGGCTCAAAAGGTCAGGGAATT 3173
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 3106 TGCTCAATGGTTAATCAGAGACTCTGCAGAAAATTTGAAGGCTTAAAAGGTCAGGGTATT 3165
Query 3174 TGGTGCGAGCAAGATGGATGTGTTTTCAATACTATCTCTTGCCCTTTCTGCAGTATTCCA 3233
||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 3166 TGGTGCGAGCAAGATGGATGTGTTTTCAATACTATCTATTGCCCTTTCTGCAGCATCCCA 3225
Query 3234 AACACATGTCTCGGAGTGCAAGTCATGGCTACTGATTCATCAAATGTCCAGTTTTTGAGC 3293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3226 AACACATGTCTCGGAGTGCAAGTCATGGCTACTGATTCATCAAATGTCCAGTTTTTGAGC 3285
Query 3294 AAAATTTTGTTCTTTGCTGATCATCTAGAAGTCACTAATGAAGCTGCAAGCAAGGATTCA 3353
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3286 AAAATTTTGTTCTTTGCTGATCATCTAGAAGTCACCAATGAAGCTGCAAGCAAGGATTCA 3345
Query 3354 ACGTTAAAGCACAAGGAACCTCTTGCTGAGACTAATGCAGCTGTGGATAAGAGTGATGTG 3413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3346 ACGTTAAAGCACAAGGAACCTCTTGCTGAGACTAATGCAGCTGTGGATAAGAGTGATGTG 3405
Query 3414 TTAAAGTCAATAGAAAGATTTGCATACTCCCCAAATCAGCAGCAAGATTCAGGAGGCTGG 3473
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3406 TTAAAGTCAATAGACAGATTTGCATACTCCCCAAATCAGCAGCAAGAATCAGGAGGCTGG 3465
Query 3474 AGGACTACAAAATCAAAGTTGAGACTACCAAAACGCAATTTTCCAACGAGCCAGAAAACC 3533
||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||| ||
Sbjct 3466 AGGACTACAAAATCAAAGTTGAGACTACCTAAACGAAATTTGCCAACGAGCAAGAAGGCC 3525
Query 3534 TAG 3536
|||
Sbjct 3526 TAG 3528
Score = 1035 bits (560), Expect = 0.0
Identities = 590/605 (98%), Gaps = 0/605 (0%)
Strand=Plus/Plus
Query 21 ATGGCTTCCACAACCAGCAAATCGGATTCGAAGGAAGAAGTGAAACAAACCCTAAACTCC 80
|||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTTCCTCAACCAGCAAATCGGATTCAAAGGAAGAAGTGAAACAAACCCTAAACTCC 60
Query 81 AAAAACCCTAAAAATGTCTACCAGATCGGAGGCCTTCAAGTTGAATTCCCTTATCAACCG 140
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAAACCCTAAAAATGTCTACCAAATCGGAGGCCTTCAAGTTGAATTCCCTTATCAACCG 120
Query 141 TACGGAACCCAGCTTGCGTTCATGAGCCGGGTCATATCTACGCTCGATCGTGCCCAGAGA 200
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATGGAACCCAGCTTGCGTTCATGAGCCGGGTCATATCTACGCTCGATCGTGCCCAGAGA 180
Query 201 GACGGTCACTGCCACGCGTTGCTCGAGTCTCCCACTGGTACGGGCAAATCTCTGTCATTG 260
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GACGGTCACTGCCACGCGTTGCTCGAGTCTCCCACTGGCACGGGCAAATCTCTGTCATTG 240
Query 261 CTCTGCTCAGTTCTCGCTTGGCAACAGAACTACAAATCTCGGCTTCTGAAAGGGAATTTG 320
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||
Sbjct 241 CTCTGCTCAGTTCTCGCTTGGCAACAGAACTATAAATCCCGGCTTCTAAAAGGAAATTTG 300
Query 321 TCTCACTCGAAAGCTGCCCCTGAAGCAGCCACCGATCCATTGAATCACGGAGGCGGATTC 380
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 301 TCTCATTCGAAAGCTGCCCCTGAAGCAGCCACCGATCCATTGAATCATGGAGGTGGATTC 360
Query 381 ATACCGGAAACGCAACCCTCAGATACTCCTGCATCTACAAATGTGGAGAAAGCTGAAACT 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATACCGGAAACGCAACCCTCAGATACTCCTGCATCTACAAATGTGGAGAAAGCTGAAACT 420
Query 441 GCAACTAAGAAGAGAACCAAAATTCCTACCATATACTATGCTTCACGAACTCATTCTCAG 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCAACTAAGAAGAGAACCAAAATTCCTACCATATACTATGCTTCACGAACTCATTCTCAG 480
Query 501 ATTACTCAAGTGATTCGTGAGTATAGGAAAACTGGTTACAGAGTGCCCATGGCTGTATTG 560
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 ATTACTCAAGTGATTCGTGAGTATAGGAAAACTGGTTACAGAGTCCCCATGGCTGTATTG 540
Query 561 GCTTCAAGAAAACATTACTGCACTAATCGTCATGTACTTGGGAAAGACAATGTAGATGAT 620
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTTCAAGAAAACATTACTGCACGAATCGTCATGTACTTGGGAAAGACAATGTAGATGAT 600
Query 621 GAATG 625
|||||
Sbjct 601 GAATG 605
Score = 433 bits (234), Expect = 7e-120
Identities = 240/243 (99%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 626 GAACGTCAATAAAATCACATCTCATCCATCACTTCAGCCCAGAGGTCACAATGAGGTTCA 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GAACGTCAATAAAATCACATCTCATCCATCACTTCAGCCCAGAGGTCACAATGAGGTTCA 713
Query 686 TGATATTGAAGATCTTGTAAAAGTTGGAAAAAATGTTAGAGGCTGCCCATATTTTGCTTC 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TGATATTGAAGATCTTGTAAAAGTTGGAAAAAATGTTAGAGGCTGCCCATATTTTGCTTC 773
Query 746 CTGGTCAATGGCGGAGAACGCACAATTGGTTTTTTGCCCTTATTCCTATATAGTTAATCC 805
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 774 CTGGTCAATGGCTGAGAACGCACAATTGGTGTTTTGCCCTTATTCCTATATAGTTAATCC 833
Query 806 TGTCATTCGAGCAGGAGTTGAAGTAGATCTGAAAGGAGCGATTATAATTTTTGATGAAGC 865
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 834 TGTCATTCGAGCAGGAGTTGAAGTAGATCTGAAAGGAGCGATTATCATTTTTGATGAAGC 893
Query 866 ACA 868
|||
Sbjct 894 ACA 896
Score = 54.7 bits (29), Expect = 6e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 933 AATATGGAAGACATTGCTCGTGAAGCAGG 961
|||||||||||||||||||||||||||||
Sbjct 898 AATATGGAAGACATTGCTCGTGAAGCAGG 926
> AT1G20750.1 | Symbols: | RAD3-like DNA-binding helicase protein
| chr1:7203302-7208998 REVERSE LENGTH=3435
Length=3435
Score = 1613 bits (873), Expect = 0.0
Identities = 1344/1562 (86%), Gaps = 69/1562 (4%)
Strand=Plus/Plus
Query 963 AAATT-ACAGAATGAACTAGAACAGATGAGCT-TGG-CGCAGCCA-ATGATTTATCAACC 1018
||||| | |||||||||||||||||||||| | || | ||||| | ||| ||| | |
Sbjct 772 AAATTGA-AGAATGAACTAGAACAGATGAG-TGAGGTTG-AGCCAGA-GATATATGATTC 827
Query 1019 CTTGTGTGAAGTAGTAGAGGGACTAATAAGCTGGATTGGAAGAAAAAAGGACTCATTAGC 1078
||||| |||||||||||||||| | |||||||||||||||||||| ||||| ||| | ||
Sbjct 828 CTTGTATGAAGTAGTAGAGGGATTGATAAGCTGGATTGGAAGAAAGAAGGATTCACTCGC 887
Query 1079 AAAACGTGATTTTCAGCATTATTTCTCTAGCTGGACTGGAGACAAAGCTTT-AAGAGAGC 1137
|||||||||| || | || |||||||||| |||||||||||| | |||||| || |||||
Sbjct 888 AAAACGTGATGTTGACCACTATTTCTCTAACTGGACTGGAGATAGAGCTTTGAA-AGAGC 946
Query 1138 TTGAGGAA-TCTAATATCACTCGTGAATGCTTCCCAATCTTATTGGAATGCTTT-ACAAA 1195
| ||||| || ||||||||||| ||| |||||||| |||| || ||| ||| || ||
Sbjct 947 TAAAGGAATTC-AATATCACTCGAGAAAACTTCCCAAACTTAAAGGCATGTTTTAACCAA 1005
Query 1196 GGCTATCAGAACATCA-AAGGAGGCAGAAATGGAATCAGATATGCTTTATTTGAGCGGGA 1254
|| |||| || |||| ||| | |||||||| || | |||| || ||||||||| ||||
Sbjct 1006 -GCGATCACAAAATCAGAAGCA-GCAGAAATTGACCCGGATAAGCCTTATTTGAGTGGGA 1063
Query 1255 TATCTGTCTTGACACTAGAAGAGTTGTTCT-CTTCACTTACATACTTCTTTTCAAGAAAT 1313
||||||||| ||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 1064 TATCTGTCTCCACACTAGAAGAGTTGTT-TGCTACACTTACATACTTCTTTTCAAGAAAT 1122
Query 1314 GGAAGTCACATCTTAGATTACCAACTGGGTTTACAACGCTCTACTAAAAGAGGAGATCCT 1373
||||||||| || ||||||| || ||||||||||||| ||| |||| |||||||| |
Sbjct 1123 GGAAGTCACGTCCTAGATTATGAAATGGGTTTACAACGTTCTGCTAAGAGAGGAGA---T 1179
Query 1374 TCTCGTACCTGGACGCATACTTTCAGTTTGTGGTGCATGAATCCTG-CTGTTGTTTTCAA 1432
| | |||||| ||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 1180 AAT-G--GGTGGACGAATACTTTCAGTTTATGGTGCATGAATCC-GTCTGTTGTTTTCAA 1235
Query 1433 AGACTTAGCTGATATATCTTTATCCATCATTTTAACATCTGGGACTTTGTCACCAATGAA 1492
||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1236 AGACTTAGCTGATCTGTCTTTATCCATCATTTTAACATCTGGGACTTTGTCACCGATGAA 1295
Query 1493 TTCTTTCTCATCTGAACTTGGGATGCAGTTTGGCACTTCTTTAGAGGCTCCACATGTTAT 1552
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||
Sbjct 1296 TTCTTTCTCATCTGAACTTGGGATGCAGTTTGGTACTTGTTTAGAGGCTCCACATGTGAT 1355
Query 1553 TGATCCTAATATGCAGGTGTGGGCTGGCGCAATCTCCAATGGTCCTAGTAATTATCCTCT 1612
||||||||||||||||||||||||||| |||||||||| || |||| |||| ||||||||
Sbjct 1356 TGATCCTAATATGCAGGTGTGGGCTGGTGCAATCTCCACTGTTCCTGGTAACTATCCTCT 1415
Query 1613 AAATGCAAGTTATAAAACAGCTGATACATATTCATTCCAGGATGCTCTTGGGAAATCATT 1672
||| |||||||||| ||||||||| ||||| |||||||||| ||||| |||||||||||
Sbjct 1416 AAACGCAAGTTATAGAACAGCTGAGGCATATGCATTCCAGGACGCTCTAGGGAAATCATT 1475
Query 1673 GGAAGAAATCTGCACTATTGTACCAGGAGGCTCTC-TGATATTCTTTCCAAGCTATAAGT 1731
||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct 1476 GGAAGAAATCTGCACTATTGTACCAGGTGGCTCTCTTG-TATTCTTTCCAAGCTATAAGT 1534
Query 1732 TGATGGAAAAACTCTGCACGCGTTGGCGTGAAACTGGGTAGTGGTCTCGGCTCTGCTTGA 1791
||||||||||||| ||||| ||||||| ||||||||| | |||||||||||||||||||
Sbjct 1535 TGATGGAAAAACTTTGCACACGTTGGCATGAAACTGGACAATGGTCTCGGCTCTGCTTGA 1594
Query 1792 AAA-AGGACCTTTTTGTTGAACCAAGAGGAGGCGCCCAGGACGAATTT-GATTCTGTTCT 1849
||| | ||||||||| | |||||||||||||| || |||||| |||| || |||||||
Sbjct 1595 AAACA-GACCTTTTTATCGAACCAAGAGGAGGATCCAAGGACG-ATTTCGAAACTGTTCT 1652
Query 1850 GAAGGGATATTATGATTCTATACGCGGGAAGAATAAATTAG-TTGGAAGAAATAGAAGAG 1908
|||| ||| |||||||| ||| |||| ||||| | ||| | ||||||||||||| || |
Sbjct 1653 CAAGGAATACTATGATTCGATAAGCGGAAAGAACAGATT-GATTGGAAGAAATAGCAGCG 1711
Query 1909 CTAAGAAAGCAGGGCCTATTAAAACTGAGACTCAAGATGATTCCAAGAAG-GGAGCTGCA 1967
||||||||||||| || ||| ||||||| ||||||||||||||||| || ||| |||||
Sbjct 1712 TTAAGAAAGCAGGGTCTGTTATAACTGAGGCTCAAGATGATTCCAAG-AGAGGATCTGCA 1770
Query 1968 TTTCTTGCAGTATGTAGGGGAAAGGTTTCAGAAGGGATTGACTTTGCTGATGACAACGCC 2027
||||||||||||||||| |||||||||||||||||||| || ||| ||||||||||||||
Sbjct 1771 TTTCTTGCAGTATGTAGAGGAAAGGTTTCAGAAGGGATGGATTTTTCTGATGACAACGCC 1830
Query 2028 AGGGCAGTGATAATTGTTGGCATTCCATTTCCAAACTTACATGATATTCAAGTCG-GACT 2086
||||||||||||||||||||||||||| |||||||||| ||||||| ||||| | ||
Sbjct 1831 AGGGCAGTGATAATTGTTGGCATTCCACTTCCAAACTTGGGCGATATTCTAGTCGAG-CT 1889
Query 2087 GAAGAAAAAATATAATGATACCTACAAGTCATCTAAAAGTCTTCTTGGAGGGAGTGAATG 2146
|||| |||||||||||||||| |||| |||||||||| ||||||||||||||||| ||
Sbjct 1890 AAAGAGAAAATATAATGATACCAACAAATCATCTAAAAACCTTCTTGGAGGGAGTGAGTG 1949
Query 2147 GTATTGCCAACAGGCCTATCGTGCTCTAAATCAAGCTGCAGGAAGATGTATCCGGCATAG 2206
||||||||||||||| ||||||||| |||||||||| |||||| |||||||||| |||||
Sbjct 1950 GTATTGCCAACAGGCGTATCGTGCTTTAAATCAAGCAGCAGGACGATGTATCCGTCATAG 2009
Query 2207 GTTTGATTATGGTGCCATCATATTCTTAG--AT-G-AGC---GA--T-ACAAAGAGCAAA 2256
||||||||||||||||||||||||||||| || | ||| || | || | | | ||
Sbjct 2010 GTTTGATTATGGTGCCATCATATTCTTAGTTATTGTAGCTCTGAGGTTACCGACAACCAA 2069
Query 2257 GGAACAGAGCGTCTATTTCAAAGTGGCTAAGGCAGTCTATCAAAGTGTATGATAATTTTG 2316
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2070 GGAACAGAGCGTCTATTTCAAAGTGGCTAAGGCA-TCTATCAAAGTGTATGATAATTTTG 2128
Query 2317 AAGCATCTATGGAAGGGTTGAGATATTTTTTCAACAGTGTCAAGGAGCA-AGTTGACAGT 2375
|||| ||||||||||| | ||||||||||||| ||||||||||||| | |||||||||
Sbjct 2129 AAGCTTCTATGGAAGGACTAAGATATTTTTTCAGCAGTGTCAAGGAG-AGAGTTGACAGC 2187
Query 2376 AAGATGTTAGGGTCCCAGGACGATACTGTTGAGAAGAACTTTTCCT-TGGAAAACCAAAG 2434
|||||||||| ||| || || | | |||| ||| |||| || ||||||||||
Sbjct 2188 AAGATGTTAGAGTCTCATGA-G---C-----AGAA---CTTGTCCTCTG-AAAACCAAAG 2234
Query 2435 CAAA-GAATACAG-AAGGAAGGAAAATCAGATTCAGAACAAATCTAGTCAAGTGGAACCA 2492
||| |||| | | ||| ||||| ||||||| |||||||||||||||||| |||||||||
Sbjct 2235 -AAATGAATTC-GTAAGAAAGGAGAATCAGACTCAGAACAAATCTAGTCATGTGGAACCA 2292
Query 2493 AA 2494
||
Sbjct 2293 AA 2294
Score = 444 bits (240), Expect = 3e-123
Identities = 289/313 (92%), Gaps = 2/313 (1%)
Strand=Plus/Plus
Query 21 ATGGCTTCCACAACCAGCAAATCGGATTCGAAGGAAGAAGTGAAACAAACCCTAAACTCC 80
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTCCACAAGAAGTAAATCGGATTCGAAGGAAGAAGTGAAACAAACCCTAAACTCC 60
Query 81 AAAAACCCTAAAAATGTCTACCAGATCGGAGGCCTTCAAGTTGAATTCCCTTATCAACCG 140
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 61 AAAAACCCTAAGAATGTCTACCAAATCGGAGGCCTTCAAGTTGAATTCCCTTACCAACCC 120
Query 141 TACGGAACCCAGCTTGCGTTCATGAGCCGGGTCATATCTACGCTCGATCGTGCCCAGAGA 200
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TACGGAACACAGCTTGCGTTCATGAGCCGGGTCATATCTACGCTTGATCGTGCCCAGAGA 180
Query 201 GACGGTCACTGCCACGCGTTGCTCGAGTCTCCCACTGGTACGGGCAAATCTCTGTCATTG 260
|| ||||||| |||||| ||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 181 GATGGTCACTCCCACGCATTGCTCGAGTCTCCCACGGGTACAGGCAAATCTCTGTCTTTG 240
Query 261 CTCTGCTCAGTTCTCGCTTGGCAACAGAACTACAAATCTCGGCTTC-TGAAAGGGAATTT 319
|||||||| ||||||||||||||| ||| ||||||||||||| ||| | || || |||||
Sbjct 241 CTCTGCTCCGTTCTCGCTTGGCAAAAGAGCTACAAATCTCGGTTTCCT-AATGGAAATTT 299
Query 320 GTCTCACTCGAAA 332
|||||| ||||||
Sbjct 300 GTCTCATTCGAAA 312
Score = 435 bits (235), Expect = 2e-120
Identities = 408/487 (84%), Gaps = 29/487 (6%)
Strand=Plus/Plus
Query 2631 ACATTTGTTCAAGTT-AAAGAGGAAGTTGAATGCTGTAGAGAAGTTATTGACCTTGAGTG 2689
||||| |||||||| |||| ||||| ||||||||| | || ||| ||||||||||| ||
Sbjct 2314 ACATTCATTCAAGTTAAAAG-GGAAGCTGAATGCTGCAAAGGAGTCATTGACCTTGACTG 2372
Query 2690 CG-GTGTCCAACCTGAGCCTGGGTATTGTGAGGTA-TCATCGGTGACCAACTGTGATGAA 2747
|| | |||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 2373 CGAG-GTCCAACCTGAGCCTGGGTATTGTGAGG-AGTCATCGGTGACCAACTGTGATGAA 2430
Query 2748 GATCTAGAAACATCTTTTGTCAAGGAAAGCTCTGGTATGATCAATGGTATTTCAGTTGCC 2807
|||| |||||||||||||||| ||||||||||||||||||||| || |||
Sbjct 2431 GATCCAGAAACATCTTTTGTC---------TCTGGTATGATCAATGGTATTGCAACAGCC 2481
Query 2808 AGTCCATGTTCTTGCTCGGTGAATGAAAGCTCTAGTCCAACAACAATAGGTCGGAGATCT 2867
|| ||||||||| ||||| | ||||||||||||| || | || | ||||| |||||||
Sbjct 2482 AGACCATGTTCTAGCTCGAAGTATGAAAGCTCTAG-CCTAGAA-AC-AGGTCTGAGATCT 2538
Query 2868 CCGAGGTCTCCTGATCAATTATTAAAGCAGCATATATCTACTCCAAATTTCAGAAAATCT 2927
| || ||||||||||||||| ||||| | |||| |||||| | |||||||||||| ||||
Sbjct 2539 CTGAAGTCTCCTGATCAATTCTTAAAACGGCATGTATCTAATGCAAATTTCAGAAGATCT 2598
Query 2928 CCTCTTGGAGCTGAGTCGTCCGTAGTAGCAACTTCTGAGAGATATTCCTTTGGTGACACC 2987
|||||||||||||| ||||| | ||| | || |||||||||||||| ||||||| |
Sbjct 2599 CCTCTTGGAGCTGAATCGTC--T-GTA--A-CTCCTGAGAGATATTCCATTGGTGATATG 2652
Query 2988 CGTAGTTTGACTCTAGAAGCAGAGTCATCTTTCAACATGAGTGTTAATTCTCAAGCTTTG 3047
|||| | |||||||||||||||||||| |||| ||||||||||||||||| || | ||||
Sbjct 2653 CGTAATATGACTCTAGAAGCAGAGTCACCTTTGAACATGAGTGTTAATTCACATGTTTTG 2712
Query 3048 AAGCGAAGAAAGTTTACCAGC-TCTCC--TG-TCATTGACCTTGAAGACGAAAACAGCGA 3103
||| ||||||||||||| | | ||||| | |||||||||||||||| |||||||| |
Sbjct 2713 AAGAGAAGAAAGTTTACTA-CATCTCCAATCATCATTGACCTTGAAGAAGAAAACAGTAA 2771
Query 3104 TGCTCCT 3110
|||||||
Sbjct 2772 TGCTCCT 2778
Score = 331 bits (179), Expect = 3e-89
Identities = 233/259 (90%), Gaps = 4/259 (2%)
Strand=Plus/Plus
Query 3112 ATTGCTCAATGGTTAATCAGAGACTCTGCAGAAAATT-TGAAGGCTCAAAAGGTCAGGGA 3170
|||||||| ||||||||||||||||||||| ||||| |||| ||||||| ||||||||
Sbjct 3026 ATTGCTCATTGGTTAATCAGAGACTCTGCA-CAAATTCTGAAAGCTCAAATGGTCAGGGT 3084
Query 3171 ATTTGGTGCGAGCAAGATGGATGTGTTTTCAATACTATC-TCTTGCCCTTTCTGCAGTAT 3229
||||||||| |||||||||||||||||||||| |||||| || ||||||||||| ||| |
Sbjct 3085 ATTTGGTGCCAGCAAGATGGATGTGTTTTCAAAACTATCTTC-TGCCCTTTCTGTAGTGT 3143
Query 3230 TCCAAACACATGTCTCGGAGTGCAAGTCATGGCTACTGATTCATCAAATGTCCAGTTTTT 3289
|||||||| || || ||| |||||||||||||||||||||||||||| ||||||||| |
Sbjct 3144 CCCAAACACCTGCCTTGGAATGCAAGTCATGGCTACTGATTCATCAAACGTCCAGTTTAT 3203
Query 3290 GAGCAAAATTTTGTTCTTTGCTGATCATCTAGAAGTCACTAATGAAGCTGCAAGCAAGGA 3349
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 3204 GAGCAAAATTTTGTTCTTTGCTGATCATCTAGAAGTCACGAATGATGCTGCAAGCAAGGA 3263
Query 3350 TTCAACGTTAAAGCACAAG 3368
||| ||||| |||||||
Sbjct 3264 AACAAGGTTAACGCACAAG 3282
Score = 113 bits (61), Expect = 1e-23
Identities = 64/65 (98%), Gaps = 1/65 (2%)
Strand=Plus/Plus
Query 900 AGGCCGTCTACT-AAATCTTTCACTGTCCACAGTAATATGGAAGACATTGCTCGTGAAGC 958
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 AGGCCGTCTACTAAAATCTTTCACTGTCCACAGTAATATGGAAGACATTGCTCGTGAAGC 737
Query 959 AGGAA 963
|||||
Sbjct 738 AGGAA 742
> AT2G05635.1 | Symbols: | DNA repair DEAD helicase RAD3/XP-D
subfamily protein | chr2:2089484-2090454 FORWARD LENGTH=441
Length=441
Score = 481 bits (260), Expect = 2e-134
Identities = 286/299 (96%), Gaps = 0/299 (0%)
Strand=Plus/Plus
Query 263 CTGCTCAGTTCTCGCTTGGCAACAGAACTACAAATCTCGGCTTCTGAAAGGGAATTTGTC 322
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
Sbjct 81 CTGCTCAGTTCTCGCTTGGCAACAGAACTATAAATCTCGGCTTCTGAAAGGCAATTTGAC 140
Query 323 TCACTCGAAAGCTGCCCCTGAAGCAGCCACCGATCCATTGAATCACGGAGGCGGATTCAT 382
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 141 TCATTCGAAAGCTGCCCCTGAAGCAGCCACCGATCCATTGAATCATGGAGGTGGATTCAT 200
Query 383 ACCGGAAACGCAACCCTCAGATACTCCTGCATCTACAAATGTGGAGAAAGCTGAAACTGC 442
|||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 201 ACCGGAAACGCAACAAAGAGACACTCCTGCATCTATAAATGTGGAGAAAGCTGAAACTGC 260
Query 443 AACTAAGAAGAGAACCAAAATTCCTACCATATACTATGCTTCACGAACTCATTCTCAGAT 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 AACTAAGAAGAGAACCAAAATTCCTACCATATACTATGCTTCACGAACTCATTCTCAGAT 320
Query 503 TACTCAAGTGATTCGTGAGTATAGGAAAACTGGTTACAGAGTGCCCATGGCTGTATTGG 561
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 321 TACTCAAGTGATTCGTGAGTATAGGAAAACTGGTTACAGAGTCCCCATGGCTGTATTGG 379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 177039141847
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5