BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921044
Length=2458
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20780.1 | Symbols: PUB44, ATPUB44, SAUL1 | senescence-assoc... 4056 0.0
AT1G76390.1 | Symbols: | ARM repeat superfamily protein | chr1... 1729 0.0
> AT1G20780.1 | Symbols: PUB44, ATPUB44, SAUL1 | senescence-associated
E3 ubiquitin ligase 1 | chr1:7217128-7220784 FORWARD
LENGTH=2877
Length=2877
Score = 4056 bits (2196), Expect = 0.0
Identities = 2345/2418 (97%), Gaps = 6/2418 (0%)
Strand=Plus/Plus
Query 2 GTGAGTTTGAAGGATTAAGATGGTTGGAAGCTCGGATGGTAACCAGTCAGATGATAGCTC 61
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 278 GTGAGTTTGAAGGATTAAGATGGTTGGAAGCTCGGATGGTGACCAGTCAGATGATAGCTC 337
Query 62 TCATTTTGAGCGAGGAGTAGATCATATCTATGAAGCATTCATCTGCCCATTGACAAAGGA 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 TCATTTTGAGCGAGGAGTAGATCATATCTATGAAGCATTCATCTGCCCATTGACAAAGGA 397
Query 122 GGTTATGCATGATCCTGTCACTTTAGAGAATGGCCGAACATTCGAGCGTGAAGCCATTGA 181
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 398 GGTTATGCATGATCCTGTCACTTTAGAGAATGGTCGAACATTCGAGCGTGAAGCCATTGA 457
Query 182 AAAATGGTTCAAGGAGTGTCGGGATAGTGGGAGACCTCCATCTTGCCCTTTGACTTCTC- 240
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 458 GAAATGGTTCAAGGAGTGTCGGGACAGTGGGAGACCTCCTTCTTGCCCTTTGACATCTCA 517
Query 241 GTGAGCTCAGC-AGCACTGATGTAAGCCCCAGCATAGCTCTGCGTAACACTATCGAAGAG 299
| ||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 518 G-GAGCTGA-CTAGCACTGATGTAAGCGCCAGCATAGCTCTGCGTAACACTATCGAAGAG 575
Query 300 TGGAGATCCAGGAATGATGCTGCCAAGCTTGACATTGCTCGTCAGTCACTGTTTTTAGGA 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TGGAGATCCAGGAATGATGCTGCCAAGCTTGACATTGCTCGTCAGTCACTGTTTTTAGGG 635
Query 360 AATGCTGAGACCGATATTTTGCAAGCTTTGATGCATGTGCGACAGATTTGCAGGACCATC 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 AATGCTGAGACAGATATTTTGCAAGCTTTGATGCATGTGCGACAGATTTGCAGGACCATC 695
Query 420 CGATTAAATAGGCATGGTGTACGCAACTCTCAGCTTATCCATATGATCATCGACATGTTA 479
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 CGATCAAATAGGCATGGTGTACGCAACTCTCAGCTTATCCATATGATCATCGACATGTTA 755
Query 480 AAAAGTACTAGCCATAGAGTGCGGTATAAGGCTCTACAAACTCTTCAAGTTGTCGTTGAA 539
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 756 AAAAGTACTAGCCATAGAGTGCGGTATAAGGCTCTACAAACTCTGCAAGTTGTCGTTGAA 815
Query 540 GGAGATGACGAGAGCAAGGCGATAGTAGCTGAAGGGGACACTGTGCGTACACTAGTTAAG 599
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 GGAGATGATGAGAGCAAGGCGATAGTAGCTGAAGGGGACACTGTGCGTACACTAGTTAAG 875
Query 600 TTCTTATCACACGAGCCATCAAAGGGGAGGGAGGCTGCTGTTTCCTTGCTGTTTGAGCTC 659
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 876 TTCTTATCACATGAGCCATCAAAGGGGAGGGAGGCAGCTGTTTCCTTGCTGTTTGAGCTC 935
Query 660 TCTAAATCAGAAGCTTTGTGCGAGAAGATTGGTTCCATTCATGGAGCACTTATATTATTG 719
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 936 TCTAAATCAGAAGCTTTGTGCGAGAAGATTGGTTCCATTCATGGAGCACTAATATTATTG 995
Query 720 ATTGGTCTGACAAGCAGCAACTCAGAAAATGTTTCAATTGTTGAGAAAGCTGATAGAACC 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 GTTGGTCTGACAAGCAGCAACTCAGAAAATGTTTCAATTGTTGAGAAAGCTGATAGAACC 1055
Query 780 TTGGAAAACATGGAGAGGTCAGAGGAAATTGTTAGGCAGATGGCTTCATATGGTAGACTC 839
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 TTGGAAAATATGGAGAGGTCAGAGGAAATTGTTAGGCAGATGGCTTCATATGGTAGACTC 1115
Query 840 CAGCCTCTTCTAGGAAAACTCCTTGAAGGCTCACCTGAAACAAAACTCTCTATGGCTTCC 899
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1116 CAGCCTCTTCTAGGCAAACTCCTTGAAGGTTCACCTGAAACAAAACTCTCTATGGCTTCC 1175
Query 900 TTTCTCGGGGAGCTTCCCTTAAATAACGATGTGAAGGTTCTTGTGGCTCAGACTGTGGGT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 TTTCTCGGGGAGCTTCCCTTAAATAACGATGTGAAGGTTCTTGTGGCTCAGACTGTGGGT 1235
Query 960 TCTTCTCTTGTCGATCTTATGAGAACTGGTGACATGCCCCAACGGGAAGCTGCTTTGAAA 1019
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1236 TCTTCTCTTGTCGATCTTATGAGAAGTGGTGACATGCCCCAACGGGAAGCTGCCTTGAAA 1295
Query 1020 GCTCTTAACAAAATCTCATCGTTCGAAGGGAGTGCTAAGGTCTTGATCAGCAAAGGAATT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 GCTCTTAACAAAATCTCATCGTTCGAAGGGAGTGCTAAGGTCTTGATCAGCAAAGGAATT 1355
Query 1080 CTTCCCCCACTTATCAAAGATCTGTTTTATGTGGGGCCAAACAACCTTCCAATTCGGTTG 1139
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 CTCCCCCCACTTATCAAAGATCTGTTTTATGTGGGGCCAAACAACCTTCCAATTCGGTTG 1415
Query 1140 AAAGAAGTCTCTGCCACTATTCTTGCTAACATAGTAAACATCGGGTATGACTTTGACAAA 1199
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1416 AAAGAAGTCTCTGCCACTATTCTTGCTAACATAGTGAACATCGGGTATGACTTTGACAAA 1475
Query 1200 GTCACTCTTGTTTCAGACAACAGAGTGGAGAATCTGCTCCATCTAATTAGCAACACAGGT 1259
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 GCCACTCTTGTTTCAGAGAACAGAGTGGAGAATCTGCTCCATCTAATTAGCAACACAGGT 1535
Query 1260 CCAGCGATCCAGTGCAAGCTGTTGGAGGTTCTTGTTGGACTCACCAGTTGCCCAAAAACA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1536 CCAGCGATCCAGTGCAAGCTGTTGGAGGTTCTTGTTGGACTCACCAGTTGCCCAAAAACA 1595
Query 1320 GTTCCAAAAGTTGTTTATGCAATTAAAACCTCCGGTGCAATCATCAGTTTGGTTCAGTTT 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1596 GTTCCAAAAGTTGTTTATGCAATTAAAACCTCCGGTGCAATCATCAGTTTGGTTCAGTTT 1655
Query 1380 ATAGAGGTCCGAGAGAATGATGATTTGCGTTTGGCTTCCATAAAGCTTCTTCATAACCTT 1439
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1656 ATAGAGGTCCGAGAGAATGATGATTTGCGGTTGGCTTCCATAAAGCTTCTTCATAACCTT 1715
Query 1440 TCCCCATTCATGAGTGAAGAACTAGCTAAGGCCTTATGTGGCACTGCAGGACAACTCGGA 1499
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1716 TCCCCATTCATGAGTGAAGAACTAGCTAAGGCCTTATGTGGCACTGCTGGACAACTCGGA 1775
Query 1500 AGCCTTGTTGCAATCATTTCAGAAAAGACACCAATCACTGAAGAACAGGCTGCAACTGCT 1559
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1776 AGCCTTGTTGCTATCATTTCAGAAAAGACACCAATCACTGAAGAACAGGCTGCTGCTGCT 1835
Query 1560 GGGCTCTTAGCTGAATTGCCAGATAGGGATTTGGGTCTGACTCAGGAGATGTTAGAAGTT 1619
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1836 GGGCTCTTAGCTGAATTGCCAGATAGGGATTTGGGTCTTACTCAGGAAATGTTAGAAGTT 1895
Query 1620 GGTGCTTTTGAAAAAATCATCTCCAAAGTGATTGGAATCCGCCAAGGGGATATCAAGGGA 1679
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1896 GGTGCTTTTGAAAAAATCATATCCAAAGTGTTTGGAATCCGCCAAGGGGATATCAAGGGA 1955
Query 1680 ATGAGGTTTGTGAGTCCTTTTCTGGAAGGACTTGTGCGTATACTTGCTAGGATTACTTTT 1739
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1956 ATGAGGTTTGTGAATCCTTTTCTGGAAGGACTTGTGCGTATACTTGCTAGGATTACTTTT 2015
Query 1740 GTTGTCAACAAAGAGGCTCGGGCCATTACCTTTTGCCGTGAGTACAATGTTGCTTCGCTC 1799
||| |||||||||||||||||||||||| ||||||||||||| || ||||||| || |||
Sbjct 2016 GTTTTCAACAAAGAGGCTCGGGCCATTAACTTTTGCCGTGAGCACGATGTTGCGTCACTC 2075
Query 1800 TTCCTTCATCTGCTTCAATCCAACGGTCAAGATAACATCCAGATGGTTTCCGCCATGGCT 1859
|||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 2076 TTCCTTCATCTGCTCCAATCCAACGGGCAAGATAACATACAGATGGTGTCCGCCATGGCT 2135
Query 1860 TTAGAGAATCTTTCACTAGAGTCTATAAAGCTGACTA-GGATGCCTGATCCGCCTCCTCT 1918
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
Sbjct 2136 TTAGAGAATCTTTCACTAGAGTCTATAAAGCTGAC-ACGGATGCCTGATCCGCCTCCTGT 2194
Query 1919 GAACTACTGTGGCTCGATCTTTTCATGTATGAGAAAACCACACGTTGTAAACGGGCTATG 1978
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 2195 GAACTACTGTGGCTCGATCTTTTCGTGTGTGAGAAAACCACACGTTGTAAACGGGCTGTG 2254
Query 1979 CAAGATCCACCAGGGAATATGTTCATTAAGAGAAACATTTTGCCTTGTCGAAGGAGAAGC 2038
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2255 CAAGATCCACCAGGGAATATGTTCATTAAGAGAAACATTTTGCCTTGTCGAAGGAGGAGC 2314
Query 2039 TGTGGAGAAATTAGTGGCTCTATTAGATCATGAAAATGAGAAAGTGGTTGAGGCCGCACT 2098
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 2315 TGTGGAGAAATTAGTGGCTCTATTAGACCATGAAAATGTGAAAGTGGTTGAGGCCGCACT 2374
Query 2099 GGCAGCTCTTTCAAGCTTACTCGAAGACGGACTAGATGTAGAGAAAGGGGTCAAGATACT 2158
|||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 2375 TGCAGCTCTATCGAGCTTACTAGAAGACGGGTTAGATGTAGAGAAAGGGGTCAAGATACT 2434
Query 2159 TGATGAAGCGGAGGGGATACCGCATATACTAAACGTTCTGAGGGAGAACCGAACAGAGAG 2218
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2435 CGATGAAGCGGATGGGATACGGCATATACTAAACGTTCTGAGGGAGAACCGAACAGAGAG 2494
Query 2219 GCTGACGAGGAGAGCGGTTTGGATGGTGGAAAGGATCTTGCGGATTGAAGACATCGCAAG 2278
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2495 GCTGACAAGGAGAGCGGTTTGGATGGTGGAAAGGATCTTGCGGATTGAAGACATAGCAAG 2554
Query 2279 AGAGGTGGCAGAGGAACAGACCCTGAGCGCTGCACTTGTGGACGCTTTCCAAAACGCTGA 2338
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2555 AGAGGTGGCAGAGGAACAGAGCCTGAGCGCTGCACTTGTGGACGCTTTCCAAAACGCTGA 2614
Query 2339 TTTTAGAACGCGACAGATCGCTGAGAACGCGTTGAAACACATTGATAAGATCCCAAACTT 2398
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2615 TTTTAGAACGAGACAGATCGCTGAGAACGCGTTGAAACACATTGATAAGATCCCAAACTT 2674
Query 2399 CTCAGGTATATTCCCAAA 2416
|||| |||||||||||||
Sbjct 2675 CTCAAGTATATTCCCAAA 2692
> AT1G76390.1 | Symbols: | ARM repeat superfamily protein | chr1:28655399-28658711
FORWARD LENGTH=2856
Length=2856
Score = 1729 bits (936), Expect = 0.0
Identities = 1975/2466 (80%), Gaps = 113/2466 (5%)
Strand=Plus/Plus
Query 26 TGGAAGCTCGGATGGTAA-CCAGTCAGATGATAGCTCTCATTTTGAGCGA-GGAGTAGAT 83
|||||| | |||||| || ||| || ||| | ||||| || || |||| | ||| | |||
Sbjct 252 TGGAAGTTGGGATGG-AAGCCAATCGGATAACAGCTCACAATTCGAGCCAGGGA-TTGAT 309
Query 84 CATATCTATGAAGCATTCATCTGCCCATTGACAAAGGAGGTTATGCATGATCCTGTCACT 143
| || || ||||| || ||||| |||||||||||| | ||||||||| |||||||||||
Sbjct 310 AACATATACGAAGCTTTTATCTGTCCATTGACAAAGCAAGTTATGCATAATCCTGTCACT 369
Query 144 TTAGAGAATGG-CCGAACATTCGAGCGTGAAGCCATTGAAAAATGG-TTCAAGGAGTGTC 201
||||||||||| | | ||||| ||||||||||| ||||| |||||| ||||| || ||||
Sbjct 370 TTAGAGAATGGTCAG-ACATTTGAGCGTGAAGCTATTGAGAAATGGTTTCAA-GAATGTC 427
Query 202 GGGATAGTGG-GAGACCTCCATCTTGCCCTTTGACTTCT-CGTGAGCTCAGCAGCACTGA 259
| || | || | ||||| |||||| ||| | |||||| | ||| | || | ||||||
Sbjct 428 GTGAAAACGGTCA-ACCTCTATCTTGTCCTATAACTTCTAAG-GAGTTGAGTATCACTGA 485
Query 260 TGTAAGCCCCAGCATAGCTCTGCGTAACACTATCGAAGAGTGGAGATCCAGGAATGATGC 319
| |||| || || |||||| | ||||||||||| |||||||||||| | |||||||||||
Sbjct 486 TCTAAGTCCAAGTATAGCTTTACGTAACACTATTGAAGAGTGGAGAGCAAGGAATGATGC 545
Query 320 TGCCAAGCTTGACATTGCTCGTCAGTCACTGTT-TTTAGGAAATGCTGAGACCGATATTT 378
| |||||||| ||||||||||||||||| || ||| |||||||||||||| ||||||
Sbjct 546 TTTGAAGCTTGATATTGCTCGTCAGTCACT-TTATTTGGGAAATGCTGAGACTAATATTT 604
Query 379 TGCAAGCTTTGATGCATGTGC-GACAGATTTGCAGGACCATCCGATTAAA-TAGGCATGG 436
||| ||||||| | |||| | || ||||||| |||| || || | ||| |||||| |
Sbjct 605 TGCTGGCTTTGAAGAATGT-CAGAGAGATTTGTAGGAATATACG-TAAAATTAGGCAACG 662
Query 437 TGTACGCAACT-CTCAGCTT-ATCCATATGATCATCGACATGTTAAAAAGTACTAGCCAT 494
||| |||| | |||||||| || | |||| | ||| ||| |||| |||| ||| |||
Sbjct 663 TGTGTGCAA-TCCTCAGCTTGTTCGGT-TGATTACCGATATGCTAAAGAGTAGTAGTCAT 720
Query 495 AG-AGTGCGGTATAAGGCTCTACAAACTCTTCAAGTTGTCGTTGAAGGAGATGACGAGAG 553
| |||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 721 -GAAGTGCGGTGTAAGGCTCTACAAACTCTTCAAGTAGTCGTTGAAGGAGATGAAGAGAG 779
Query 554 CAAGGCGATAGTAGCTGAAGGGGACACTGTGCGTAC-ACTAGTTAAGTTCTTATCACACG 612
|||||| |||||||||||||| |||||||||||||| | ||||||||||||| || || |
Sbjct 780 CAAGGCAATAGTAGCTGAAGGAGACACTGTGCGTACTA-TAGTTAAGTTCTTGTCTCAAG 838
Query 613 AGCCATCAAAGGGGAGGGAGGCTGCTGTTTCCTTGCTGTTTGAGCTCTCTAAATCAGAAG 672
||||||||||||||||||| || ||||||||| || ||||||||||||||||||| ||||
Sbjct 839 AGCCATCAAAGGGGAGGGAAGCAGCTGTTTCCGTGTTGTTTGAGCTCTCTAAATCTGAAG 898
Query 673 CTTTGTGCGAGAAGATTGGTTCCATTCATGGAGCACTTATATTATTGATTGGTCTGACAA 732
| || |||||||||||||| || || ||||||||| | || |||||| ||||||||||||
Sbjct 899 CATTATGCGAGAAGATTGGATCAATCCATGGAGCAATCATCTTATTGGTTGGTCTGACAA 958
Query 733 GCAGCAACTCAGAAAATGTTTCAATTGTTGAGAAAGCTGATAGAACCTTGGA-AAACATG 791
||||||| ||||| |||||||||| ||||||||||||||||| || ||| || ||| ||
Sbjct 959 GCAGCAAATCAGAGAATGTTTCAACTGTTGAGAAAGCTGATA-AAACTTTGACAAATTTG 1017
Query 792 GAGAGGTCAGAGGAAATTGTTAGGCAGATGGCT-TCATATGGTAGACTCCAGCCTCTTCT 850
|||||||||||||||| |||| | ||||||||| ||| |||||||||| |||||||||||
Sbjct 1018 GAGAGGTCAGAGGAAAATGTTCGACAGATGGCTATCA-ATGGTAGACTGCAGCCTCTTCT 1076
Query 851 AGGAAAACTCCTTGAAGGCTCACCTGAAACAAAACTCTCTATGGCTTCCTTTCTCGGGGA 910
| ||||| |||||||| ||||| ||||||||| | || ||||||| || ||| ||||
Sbjct 1077 TGCTAAACTTCTTGAAGGTTCACCGGAAACAAAAGTTTCCATGGCTTTCTATCTTGGGGT 1136
Query 911 GCTTCCCTTAAATAACGATGTGAAGGTTCTTGTGGCTCAGACTGTGGGTTCTTCTCTTGT 970
||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct 1137 TCTTGCTTTAAATAACGATGTGAAAGTTATTGTGGCTCAGACTGTGGGTTCTTCTCTTAT 1196
Query 971 CGATCTTATGAGAACTGGTGACATGCCCCAACGGGAAGCTGCTTTGAAAGCTCTTAACAA 1030
|||||||||||||||| | |||||| ||||||||||||||||||| ||||||||||||
Sbjct 1197 CGATCTTATGAGAACTCGCGACATGAGCCAACGGGAAGCTGCTTTGGGAGCTCTTAACAA 1256
Query 1031 AATCTCATCGTTCGAAGGGAGTGCTAAGGTCTTGATCAGCAAAGGAATTCTTCCC-CCAC 1089
|||||||| || |||||||||||||| |||| |||| || |||||||| ||| || |
Sbjct 1257 CATCTCATCCTTTGAAGGGAGTGCTAAACTCTTAATCAACACCGGAATTCT-CCCACCGC 1315
Query 1090 TTATCAAAGATCT-GTTTTATGTGGGGCCAAACAACCTTCCAATTCGG-TTGAAAGAAGT 1147
|||||||||| || ||| ||||| ||||||||| | |||||||| || || ||||||||
Sbjct 1316 TTATCAAAGA-CTTGTTCTATGTTGGGCCAAACCAGCTTCCAATCCGACTT-AAAGAAGT 1373
Query 1148 CTCTGCCACTATTCTTGCTAACATAGTAAACATCGGGTATGACTTTGACAAAGT-C---- 1202
|||||| ||||||||||| || ||||| ||||| ||||| ||||| |||||||| |
Sbjct 1374 CTCTGCAACTATTCTTGCCAATATAGTGAACATTGGGTACGACTTCGACAAAGTTCCTGT 1433
Query 1203 ---AC-TC-T--------T---GTTTCAGAC-AACAGAGTGGAGAATCTGCTCCATCTAA 1245
|| || | | |||||||| || | ||||||||| || ||||| ||||
Sbjct 1434 TGGACCTCATCACCAAACTCTTGTTTCAGAGGAA-ATAGTGGAGAACCTTCTCCAACTAA 1492
Query 1246 TTAGCAACACAGGTCCAGCGATCCA-GTGCAAGCTGTTGGAGGTTCTTGTTGGACTCACC 1304
|||||||| ||||||| ||||| | | |||||||||| ||||||||||||||||||
Sbjct 1493 CAAGCAACACTGGTCCAGAAATCCAAG-GAAAGCTGTTGGCGGTTCTTGTTGGACTCACT 1551
Query 1305 AGTTGCCCAAAAACAGTTCCAAAAGTTGTTTATGCAATTA-AAACCTCCGGTGCAATCAT 1363
|| || ||||| | ||| || ||||||| ||| || | |||| || | ||| |||||
Sbjct 1552 AGCTGTCCAAACTCGGTTATTAATGTTGTTTCTGCCATCAGAAAC-TCAGCTGCCATCAT 1610
Query 1364 CAGTTTGGTTCAGTTTATAGAGGTCCGA-GAGAATGATGATTTGCGTTTGGCTTCCATAA 1422
|| |||||||||||| | ||| | | | ||||| ||||||||||| || ||||| || |
Sbjct 1611 AAGCTTGGTTCAGTTTGTTGAGATAC-ATGAGAACGATGATTTGCGGTTAGCTTCTATCA 1669
Query 1423 AGCTTCTTCATAACCTTTCCCCATTCATGAGTGAAGAACTAGCTAAGGCCTTATGTGGCA 1482
|||||||||||||| |||||||| |||||||||||||||||| || || || || |||
Sbjct 1670 AGCTTCTTCATAACATTTCCCCACACATGAGTGAAGAACTAGCCAATGCGTTGCGTAGCA 1729
Query 1483 CTGCAGGACAACTCGGAAGCCTTGTTGCAATCATTTCAGAAAAGACACCAA---TCACTG 1539
||| ||||| ||||||||||||||| | ||||| ||||| || ||||||| ||||||
Sbjct 1730 CTGTTGGACAGCTCGGAAGCCTTGTTTCGATCATATCAGAGAATACACCAACAATCACTG 1789
Query 1540 AAGAACAGGCTGCAACTGCTGGGCTCTTAGCTGAA-TTGCCAGATAGGGATTTGGGTCTG 1598
| ||||| |||||| ||||||| || ||||||||| || || || || ||||||| ||||
Sbjct 1790 AGGAACAAGCTGCAGCTGCTGGACTTTTAGCTGAACTT-CCTGAGAGAGATTTGGTTCTG 1848
Query 1599 ACTCAGGAGAT-GTTA-GAAGTTGGTGCTTTTGAAAAAATCATCTCCAA-AGT-GATTGG 1654
|| | ||||| |||| || | ||||||||||| |||||||||||||| | | | ||||
Sbjct 1849 ACA-ATGAGATTGTTAAGA-GAAGGTGCTTTTGAGAAAATCATCTCCAAGA-TAG-TTGG 1904
Query 1655 AATCCGCCAAGGGGATATCA-AGGGAATGAGGTTTGTGAGTCCTTTTCTGGAAGGACTTG 1713
|| |||||||| || |||| ||| ||| |||| | ||| | ||||| ||||||||||
Sbjct 1905 TATTCGCCAAGGAGAAATCAGAGG-AATCCGGTTCGAGAGAACATTTCTCGAAGGACTTG 1963
Query 1714 TGCGTATACTTGCTAGGATTACTTTTGTTGTCAACAAAGAGGCTCGG-GCCA-TTACCTT 1771
| |||| || ||| |||| || || | ||| ||| ||| || | |||| || ||
Sbjct 1964 TTAGTATTCTCGCTCGGATCACCTTCGCACTCACCAAGGAGACT-GACGCCACTTTG-TT 2021
Query 1772 TTGCCGTGAGTACAATGTTGCTTCGCTCTTCCTTCATCTGCTTCAATCCAACGGTCAAGA 1831
||| ||||| | ||| || |||| || |||||| |||| |||||||||||| |||||||
Sbjct 2022 CTGCTGTGAGAAAAATCTTCCTTCACTTTTCCTTGATCTCCTTCAATCCAACAGTCAAGA 2081
Query 1832 TAACATCCAGATGGTTTCCGCCATGGCTTTAGAGAATCTTTCACTAGAGTCTATAAAGCT 1891
||||||||||| || ||| || | || || |||||||||||||| || || | ||| ||
Sbjct 2082 TAACATCCAGAGGGCTTCTGCAACAGCATTGGAGAATCTTTCACTTGAATCCAAAAATCT 2141
Query 1892 GACTAGGATGCCTGATCCGCCTCCTC-TGAACT-ACTGTGGCTCGATCTTTTCATGTATG 1949
|| | ||| ||||| | |||||||| | | || |||||| || |||||||||||| ||
Sbjct 2142 TACAAAGATACCTGAACTGCCTCCTCCT-A-CTTACTGTGTATCCATCTTTTCATGTCTG 2199
Query 1950 AGAAAACCACAC-GTTGTAA-ACGGGCTATGCAAGATCCACCA-GGGAATATGTTCATTA 2006
|| ||||| | | ||||| | ||| | ||||||||||| || |||| |||||||| ||
Sbjct 2200 AGCAAACCGC-CTGTTGTTCTA-GGGATTTGCAAGATCCATCAAGGGA-TATGTTCAGTA 2256
Query 2007 AGAGAAA-CATTTTGCCTTGTCGAAGGAGAAGCTGTGGAGAAATTAGTGGCTCTATTAGA 2065
||||||| | ||||| || || |||||| |||| || || || || || | ||| |||||
Sbjct 2257 AGAGAAAGC-TTTTGTCTCGTTGAAGGACAAGCAGTAGATAAGTTGGTTGATCTCTTAGA 2315
Query 2066 TCATGAAAATGAGAAAGTGGTTGAGGCC-GCACTGGCAGCTCTTTCAAGC-TTACTCGAA 2123
||||||||||| || ||||||| | || ||||| |||||||| || | | || | ||
Sbjct 2316 CCATGAAAATGACAAGGTGGTTG-GACCAGCACTTGCAGCTCTCTCTA-CATTGTTAGAG 2373
Query 2124 GACGGACTAGATGTAG-AGAAAGGGGTCAAGAT-ACTTGATGAAGCGGAGGGGAT-ACCG 2180
||||| ||||||| | | || || || | ||| | |||||||||| || ||||| || |
Sbjct 2374 GACGGTTTAGATGTTGTACAA-GGAGTGA-GATTAATTGATGAAGCAGACGGGATTAC-G 2430
Query 2181 CATATACTAAACGTTCTGAGGGAGAACCGAACAGAGAGGCTGACGAGGAGAGCGGTTTGG 2240
| |||| |||| ||||| |||||| |||||||||| | | || ||||| || |||
Sbjct 2431 CCTATATTAAATGTTCTTTTGGAGAATCGAACAGAGAATTTAAGGATTAGAGCTGTGTGG 2490
Query 2241 ATGGTGGAAAGGATCTTGCGGATTGAAGACATCGCAAGAGAGGTGGCAGAGGAACAGACC 2300
||||| || |||||||| || |||||||| || || ||||| |||| ||| ||||| |
Sbjct 2491 ATGGTCGAGAGGATCTTACGTATTGAAGAAATAGCTAGAGAAGTGGGAGAAGAACAAAAT 2550
Query 2301 CTGAGC-GCTGCACTTGTGGACGC-TTTCCAAAACGCTGATTTTAGAACGCGACAGATCG 2358
| | | || |||||||||||||| |||| ||||||| |||||||| || |||||||| |
Sbjct 2551 GTAA-CTGCAGCACTTGTGGACGCCTTTC-AAAACGCCGATTTTAGGACACGACAGATTG 2608
Query 2359 CTGAGAACGCGTTGAAACACATTGATAAGATCCCAAACTTCTCAGGTATATTC-CCAA-A 2416
| ||||| ||||||| ||||| || || |||||||||||||| ||||||||| |||| |
Sbjct 2609 CAGAGAAGGCGTTGAGGCACATCGACAAAATCCCAAACTTCTCTGGTATATTCACCAACA 2668
Query 2417 TATGGT 2422
| ||||
Sbjct 2669 T-TGGT 2673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121955838433
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5