BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921048
Length=544
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20816.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 911 0.0
AT1G76405.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 492 2e-138
> AT1G20816.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G76405.2);
Has 52 Blast hits to 52 proteins in 19 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:7233768-7235128
FORWARD LENGTH=737
Length=737
Score = 911 bits (493), Expect = 0.0
Identities = 527/544 (97%), Gaps = 0/544 (0%)
Strand=Plus/Plus
Query 1 GAGAAAATCTACTGAGAAAAATGGAGACTTCTCTGAGATATGCTACCAATTCCAGGTCTC 60
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 27 GAGAAAATCTAGTGAGAAAAATGGAGACTTCTCTGAGATATGCTACTAATTCCAGGTCTC 86
Query 61 TGAAAATTCATGCCAAGGAGAAGTTTCCGGTGAACTCCAAAACTCGCCTGCAGCTTCATG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 TGAAAATTCATGCCAAGGAGAAGTTTCCGGTGAACTCCAAAACTCGCCTGCAGCTTCATG 146
Query 121 GAGAGCTAGATACAGGAGCTGGAGTGCCAAGTTACTTCTGTGCAATGATAAGACACTTTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 147 GAGAGCTAGATACAGGAGCTGGAGTGCCAAGTTACTTCTGTGCAATGATAAGATACTTTT 206
Query 181 TCCATGAGGCTTCAACAAGCCTTGGCCTTGGTTTGCATTATGATAAACGCGAAAAGCTTC 240
| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 207 TTCATGAGGCTTCAACAAACCTTGGAGTTGGTTTGCATTATGATAAACGCGAAAAGCTTC 266
Query 241 GGTGTCTTGTACGTGGGAAAAAGAAGTTTCCTGTGATAACTGATGAAGTTGTAACCTTTA 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 267 GGTGTCTTGTACGTGGGAAAAAGAAGTTTCCTGTGATAACTGATGAGGTTGTAACCTTTA 326
Query 301 ATATCAAAGGAAGATGTGATTTTGACCAGGACTTTGTTCAGAGGAACGCGAAAGGAGCTG 360
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 327 ATATCAAAGGAAGATGTGATTTTGACCAGGACTTAGTTCAGAGGAACGCAAAAGGAGCTG 386
Query 361 CTGAATTTGATTGGAACATATGGAAGTTTCAGAAAGATCAGGATTTACGCCTCCGAATTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 387 CTGAATTTGATTGGAACATATGGAAGTTTCAGAAAGATCAGGATTTACGCCTCAGAATTG 446
Query 421 GCTACGAAATGTTTGAGAAGGTCCCTTATATGCAGATTAGAGAAAACAATTGGACTTTCA 480
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 447 GCTACGAAATGTTTGAGAAGGTACCTTATATGCAGATTAGAGAAAACAATTGGACTTTTA 506
Query 481 ACACCAACTTGAAAGGAAAATGGAATGTGAGGTTTGATCTGTAATGAATAAACAGGAACA 540
|||| |||||||||||||||||||||||||||| ||||||||||||| |||||| |||||
Sbjct 507 ACACGAACTTGAAAGGAAAATGGAATGTGAGGTATGATCTGTAATGAGTAAACAAGAACA 566
Query 541 GAAA 544
||||
Sbjct 567 GAAA 570
> AT1G76405.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G20816.1);
Has 52 Blast hits to 52 proteins in 19 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:28661884-28663789
FORWARD LENGTH=730
Length=730
Score = 492 bits (266), Expect = 2e-138
Identities = 447/533 (84%), Gaps = 18/533 (3%)
Strand=Plus/Plus
Query 1 GAGAAAATC-TACTGAGAAAAATGGAGACTTCTCTGAGATATGCTACCAATTCCAGGTCT 59
||||||||| | |||| ||||||||||||||| |||| ||| | | |||||||| ||||
Sbjct 91 GAGAAAATCGT-TTGAGGAAAATGGAGACTTCTATGAGGTATACCAGCAATTCCAAGTCT 149
Query 60 CTGAAAATTCATGCCAAGGAGAAGTTTCCGGTGAACTCCAAAACTCGCCTGCAGCTTCAT 119
|||| ||||||||||| |||||| ||||||||||||| ||||| | | |||||||||
Sbjct 150 ATGAAGATTCATGCCAAAGAGAAGGTTCCGGTGAACTCAAAAACCCATTTACAGCTTCAT 209
Query 120 GGAGAGCTAGATACAGGAGCTGGAG-TGCCAAGTTACTTCTGTGCAATGATAAGACAC-T 177
|||||| ||||||| ||| |||| | | || |||||||||||||| ||||| |||||| |
Sbjct 210 GGAGAGTTAGATACTGGAACTGGGGCT-CCGAGTTACTTCTGTGCGATGATTAGACACTT 268
Query 178 TTTTCCATGAGGCTTCAACAAGCCTTGGCCTTGGTTTGCATTATGATAAACGCGAAAAGC 237
|||||| ||||||||||||| ||||||| | || |||||||||||||| ||| ||||||
Sbjct 269 TTTTCC-TGAGGCTTCAACAGGCCTTGGGGTAGGATTGCATTATGATAAGCGCCAAAAGC 327
Query 238 TTCGGTGTCTTGTACGTGGGAAAAAGA-AGTTTCCTGTGATAACTGATGAAG-TTGTAAC 295
|||||||||||||||| ||||||| | |||||||||| | | ||||| ||| ||||||
Sbjct 328 TTCGGTGTCTTGTACG-CGGAAAAAAAGAGTTTCCTGTAAGAGCTGAT-AAGCGTGTAAC 385
Query 296 CTTTAATATCAAAGGAAGATGTGATTTTGACCAGGACTTTGTTCAGAGGAACGCGAAAGG 355
||||||||| ||||| | |||||| |||| |||||||| ||||| |||| | |||||
Sbjct 386 CTTTAATATTAAAGGGCGGTGTGATATTGATCAGGACTTAAATCAGAAGAACCCCAAAGG 445
Query 356 AGCTGCTGAATTTGATTGGAACAT-ATGGAAGTTTC-AGAAAGATCAGGATTTACGCCTC 413
||| || ||||||| |||||||| |||| | |||| || ||||||||||| |||| |
Sbjct 446 AGCAGCAGAATTTGCCTGGAACATAATGG-A-TTTCAAGGAAGATCAGGATGTACGGAT- 502
Query 414 CGAA-TTGGCTACGAAATGTTTGAGAAGGTCCCTTATATGCAGATTAGAGAAAACAATTG 472
| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 503 CAAAGTTGGCTACGAAATGTTTGATAAGGTCCCTTATATGCAGATTAGAGAAAACAATTG 562
Query 473 GACTTTCAACACCAACTTGAAAGGAAAATGGAA-TGTGAGGTTTGATCTGTAA 524
|||| ||||| | ||| |||| ||||||||||| | || ||| ||| ||||||
Sbjct 563 GACTCTCAACGCGAACATGAAGGGAAAATGGAACT-TGCGGTATGACCTGTAA 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26071522293
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5