BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921070
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21000.1 | Symbols: | PLATZ transcription factor family pro... 1408 0.0
> AT1G21000.1 | Symbols: | PLATZ transcription factor family protein
| chr1:7337728-7339452 FORWARD LENGTH=1296
Length=1296
Score = 1408 bits (762), Expect = 0.0
Identities = 814/840 (97%), Gaps = 0/840 (0%)
Strand=Plus/Plus
Query 1 GGAGCTCGCAAATCTGGCTATCGAAAACCACAATCACAAACTCAACTTCGGGGCCTTCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 GGAGCTCGCAAATCTGGCTATCGAAAACCACAATCACAAACTCAACTTCGGGGCCTTCAA 172
Query 61 GGCCAATCACAAGAAAGTCATGGGACCAATGATAAGAACAGAGGAAGAAGGAGACTATAC 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 173 GGCCAATCACAAGAAAGTCATGGGACCAATGATAAGAACAGAGGAAGAAGAAGACTATAC 232
Query 121 GAGTCCACCGTGGCTAATGCCAATGCTACGAGGGAGTTACTTCGTCCCTTGTTCGATCCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 233 AAGTCCACCGTGGCTAATGCCAATGCTACGAGGGAGTTACTTCGTCCCTTGTTCCATCCA 292
Query 181 CGTCGATTCAAACAAAAACGAATGCAATTTGTTCTGTCTTGATTGTGCTGGAAATGCCTT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 TGTCGATTCAAACAAAAACGAATGCAATTTGTTCTGTCTTGATTGTGCTGGAAATGCCTT 352
Query 241 TTGCTCTTACTGTTTAGTCAAACATAAAGACCATCGTGTTGTTCAGATACGAAGATCTTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 TTGCTCTTACTGTTTAGTCAAACATAAAGACCATCGTGTTGTTCAGATACGAAGATCTTC 412
Query 301 GTACCATAACGTGGTGAGAGTGAATGAGATACAGAAGTTCATAGACATCTCTTGCGTTCA 360
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 413 GTACCATAACGTTGTGAGAGTGAATGAGATACAGAAGTTCATAGACATCGCTTGTGTTCA 472
Query 361 GACATATATCATCAACAGCGCAAAGATCGTGTTCCTCAATGAAAGACCTCAGCCTAGAAT 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GACATATATTATCAACAGCGCAAAGATCGTGTTCCTCAATGAAAGACCTCAGCCTAGAAT 532
Query 421 CGGCAAAGGTGTTACAAACACTTGTGAAATCTGTTGCAGAAGCCTCCTTGATTCTTTCAG 480
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 533 CGGTAAAGGTGTTACAAACACTTGTGAAATCTGTTGCAGAAGTCTCCTTGATTCTTTCAG 592
Query 481 GTTCTGCTCTCTCGGCTGCAAGCTTGGAGGAATGAAGAGAGGAGATTCATCTTTAACCTT 540
||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||
Sbjct 593 GTTCTGCTCTCTCGGCTGCAAGCTTGGAGGAATGAGGAGAGGAGATTTATCTCTAACCTT 652
Query 541 CTCTTTGAAAGGGAAGCATGGTAGAGAGTACCAAGGTGGGTCGGAATCAGATGAAGCCAC 600
|||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct 653 CTCTTTGAAAGGAAAGCATGGGAGAGAGTACCTTGGTGGGTCGGAATCAGATGAAGCTAC 712
Query 601 TACACCAACTAAGATGCGTAAGACCAATGCTTTCAACCGTCTGATGAGTGGTCTCTCGAT 660
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TACACCGACTAAGATGCGTAAGACCAATGCTTTCAACCGTCTGATGAGTGGTCTCTCGAT 772
Query 661 CTCAACCGTTAGATTCGATGACTACGGTCCTGGTGGTGATCAAAGGTCTTCAAGCTCTGG 720
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 773 CTCAACCGTTAGATTCGATGACTACGGTCCCAATGGTGATCAAAGGTCTTCAAGCTCTGG 832
Query 721 TGATGAAGGTGGTTTTAGTTTCTCTCCGGGAACATCTCCGATCTACAATCACCGGAATTC 780
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 833 TGATGAAGGTGGTTTTAGTTTCTCTCCGGGAACACCTCCGATCTATAATCACCGGAATTC 892
Query 781 AAGCAGACGAAAGGGTGTCCCTCACCGTGCTCCGTTTTAAGAAAAGATAATTACTGAATT 840
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 893 AAGCAGACGAAAGGGTGTCCCTCACCGTGCTCCGTTCTAAGAAAAGATAATTACTAAATT 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5