BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921071
Length=664
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 963 0.0
> AT1G21010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 14 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G76600.1); Has 206 Blast hits to 206 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 206; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr1:7346156-7346973 FORWARD LENGTH=818
Length=818
Score = 963 bits (521), Expect = 0.0
Identities = 622/669 (93%), Gaps = 14/669 (2%)
Strand=Plus/Plus
Query 1 AATTTGTTACCTCAATC-AAAATGGGAATCTGTGTGTCGTTTAATCGGAAAGACTCAAAT 59
||||||||| ||||||| |||||||||||||||||||||||| |||| |||| ||||||
Sbjct 63 AATTTGTTATCTCAATCAAAAATGGGAATCTGTGTGTCGTTTCGTCGGGAAGATTCAAAT 122
Query 60 TCTTCGCCGACGGTGAAGATCGTGACGGTTAACGGCGATCTACGTGAATACAATGTTCCG 119
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 123 TCTTCACCGACGGTGAAGATCGTGACGGTTAACGGCGATCTCCGTGAATACAATGTTCCG 182
Query 120 GTGATAGCATCTCAAGTTTTGGAAGCTGAATCGGCGGCAG---------CTTCGTCTTCC 170
|||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 183 GTGATAGCATCTCAAGTTTTGGAAGCTGAATCAGCGGCAGCTTATTCATCTTCGTCTTCC 242
Query 171 TCTAGATCTTCTTCTTATTTCATCTGCGATTCAGATTCTCTCTACTACGACGATTTCATT 230
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TCTAGACCTTCTTCATATTTCATCTGCGATTCAGATTCTCTCTACTACGACGATTTCATA 302
Query 231 CCGGCGATCAAATCGGAAGAACCGCTTCAGGCGGACCAGATCTACTTCGTTCTTCCGATT 290
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 303 CCGGCGATCAAATCGGAAGAGCCGCTTCAGGCGGACCAGATCTACTTCGTTCTCCCGATT 362
Query 291 TCTAAACGTCAGAATCGTTTAACGGCGTCGGACATGGCGGCTCTCGCCGTTAAAGCGAGC 350
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 363 TCTAAACGTCAGAGTCGTTTAACGGCGTCGGATATGGCGGCTCTCGCCGTTAAAGCAAGC 422
Query 351 GTCGCGATACAAAACTCTGTTAAGAAAGAATCTCGTCGGCGAAAGAAGGTGAGAATCTCT 410
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 423 GTCGCGATACAAAACTCTGTTAAGAAAGAATCTCGTCGGCGTAAGAAGGTGAGAATCTCT 482
Query 411 CCGGTTATGATGTTGACGGGGTCTAACGATTCCGTTAACGGAAATGGAAGTGAAACGACG 470
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 CCGGTTATGATGTTGACGGGGTCTAACGATTCCGTTAACGGAAATGGAAGTGAAACGACA 542
Query 471 GTTAAGAAGGGACGGCCGTTAGAGAGTAAAACTGCGCCGTTTAAAGCTTCAAGTGGTTAT 530
||||| |||||||||||||| | |||||||||||||||| |||||||||| ||||| ||
Sbjct 543 GTTAAAAAGGGACGGCCGTTTGTGAGTAAAACTGCGCCGGTTAAAGCTTCGAGTGGG-AT 601
Query 531 AA-CCGGTCCGGTTCGGTTCGTAATTTGAGGAGATACACGTCTAAGCGAGCTAAGCTGGC 589
|| ||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 602 AAACCGGTCCGGTTCGGTTCGTAATTTGAGAAGATACACTTCTAAACGAGCTAAGCTGGC 661
Query 590 GGTTCGATCTTTTAGGCTGAAACTTTCGACGATCTACGAAGGCTCCGTCGTTTAAAT--T 647
|||||||||||| ||||| |||||||| || ||||||||||||||||||||||| || |
Sbjct 662 GGTTCGATCTTTCAGGCTAAAACTTTCAACCATCTACGAAGGCTCCGTCGTTTAGATCGT 721
Query 648 TATTTATTT 656
||||| |||
Sbjct 722 TATTTTTTT 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099619933
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5