BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921072
Length=776
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21050.1 | Symbols: | Protein of unknown function, DUF617 |... 1118 0.0
> AT1G21050.1 | Symbols: | Protein of unknown function, DUF617
| chr1:7366775-7367678 FORWARD LENGTH=904
Length=904
Score = 1118 bits (605), Expect = 0.0
Identities = 712/763 (93%), Gaps = 9/763 (1%)
Strand=Plus/Plus
Query 13 aaaaaaaTCATGAGGACAATGGTTGATTTAGGAAAGCAAAGAGATCATCACTATCAACAC 72
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 76 AAACAAATCATGAGGACAATGGTTGATTTAGGAAAGCAAAGAGATCATAACTATCACCAC 135
Query 73 ATGCAATTCATAACCACTCCGACCACCGTCGATTGTTCTCGCGAATTCCGTCACCGACGA 132
|||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct 136 ATGCAAATCATAACCACTCCTACCTCCGTGGATTGTTCTCGCGAATTCCGTCACCGACGA 195
Query 133 ACACTCCGATCACTCATCGAATGCATGATCCCATACTGTTGCACTTACCAACAACAGCCT 192
||||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 196 ACACTTCGTTCACTCATCGAATGCATGATTCCATACTGTTGCACTTACCAACAACAACCA 255
Query 193 TACCAAAACGACACTGTTTCAGtctctt-c-c-tc-t--tcctcttcctcctcagaccac 246
|||||||||||||| |||||||||||| | | || | || ||||| ||||||||||||
Sbjct 256 TACCAAAACGACACCCTTTCAGTCTCTTCCACTTCATCCTCGTCTTCATCCTCAGACCAC 315
Query 247 tcttcctcctcctccCAGAGTAACAGCATCGTAAGTGGAACTTTCTTCGGCCACCGTCGT 306
|| | |||||||||||||||| ||| | ||||||||||||||||||||| |||||||||
Sbjct 316 TC-T--TCCTCCTCCCAGAGTAGCAGTACCGTAAGTGGAACTTTCTTCGGACACCGTCGT 372
Query 307 GGCAGAGTCAGCTTCTGCCTTCAAGACGCCGCCGTGGGATCTTCACCGCTTCTCCTCCTT 366
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 373 GGCCGAGTCAGCTTCTGCCTTCAAGACGCCGCCGTGGGATCTTCACCGCTGCTCCTCCTC 432
Query 367 GAGCTAGCTGTTCCCACGGCTGCGTTAGCCAAGGAAATGGACGAGGCAGGTGTTCTACGC 426
|||||||||||||| ||||| || |||||||| ||||||||||||| |||||||||||||
Sbjct 433 GAGCTAGCTGTTCCTACGGCAGCTTTAGCCAAAGAAATGGACGAGGAAGGTGTTCTACGC 492
Query 427 ATAGCCCTAGAGTGTGACCGTCGTAGAAGCAGCAACAGTCGTTCGTCGTCGATCTTTGAT 486
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 493 ATAGCCCTCGAGTGTGACCGTCGTAGAAGCAGCAATAGTCGTTCGTCTTCGATCTTTGAT 552
Query 487 GTTCCTGTGTGGTCGATGTATTGCAACGGAAGGAAAATGGGATTTGCCGTGAGGAGAAAG 546
|||||||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 553 GTTCCTGTTTGGTCTATGTTTTGTAACGGAAGGAAAATGGGATTTGCCGTGAGGAGAAAG 612
Query 547 GTGACGGAGAACGACGCCGTTTTCTTAAGGATGATGCAGTCTGTGTCAGTCGGAGCCGGA 606
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 613 GTGACGGAGAACGACGCCGTTTTCTTGAGGATGATGCAGTCTGTGTCAGTCGGAGCCGGA 672
Query 607 GTTGTGCCGTCGGAAGAGGAGGAGCAGACGTTGTATTTGAGGGCTAGGTTTGAGCGAGTT 666
|| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 673 GTGGTGCCGTCGGAAGAGGAGGATCAGATGTTGTATTTGAGGGCTAGGTTTGAGCGAGTT 732
Query 667 ACTGGGTCGAGTGACTCGGAATCGTTTCATATGATGAATCCGGGTGGTAGTTATGGACAA 726
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 733 ACTGGTTCGAGTGACTCGGAATCGTTTCACATGATGAATCCGGGTGGTAGTTATGGACAA 792
Query 727 GAGCTTAGTATATTTCTTTTGAGATCGTGAAATTAAGTACGGT 769
||||||||||||||||||||| |||||||||||||||||||||
Sbjct 793 GAGCTTAGTATATTTCTTTTGCGATCGTGAAATTAAGTACGGT 835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37725844397
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5