BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921075
Length=1087
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21070.1 | Symbols: | Nucleotide-sugar transporter family p... 1770 0.0
AT1G76670.1 | Symbols: | Nucleotide-sugar transporter family p... 1131 0.0
AT4G27052.1 | Symbols: | unknown pseudogene | chr4:13579080-13... 119 6e-26
> AT1G21070.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr1:7375869-7378147 REVERSE LENGTH=1663
Length=1663
Score = 1770 bits (958), Expect = 0.0
Identities = 1038/1077 (96%), Gaps = 4/1077 (0%)
Strand=Plus/Plus
Query 14 AATCCAAATGGAG-AAGACAGAGAACGAGAAGAAGCCATCGGCGGTATCTGACGTCGGAG 72
||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 331 AATCCAAATGGAGAAAG-CAGAGAACGAGAAGAAGCCATCGGCTGTATCTGACGTCGGAG 389
Query 73 CATGGGCTATGAACGTAACGAGCTCCGTTGGGATCATCATGGCGAATAAACAACTAATGT 132
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 390 CATGGGCTATGAACGTAACGAGCTCCGTTGGGATCATCATGGCTAATAAACAACTAATGT 449
Query 133 CATCATCTGGTTTCGGCTTTAGCTTCGCGACAACTCTCACGGGATTTCACTTTGCTCTCA 192
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 450 CATCATCTGGATTCGGCTTCAGCTTCGCGACAACTCTCACGGGATTTCACTTTGCTCTTA 509
Query 193 CTGCTCTCGTTGGTATGGTGTCAAACGCGACTGGTTTATCTGCATCTAAGCATGTTCCTC 252
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 510 CTGCTCTCGTTGGTATGGTGTCGAATGCGACTGGTTTATCAGCATCTAAGCATGTTCCTC 569
Query 253 TTTGGGAGCTTCTTTGGTTCTCACTCGTTGCTAATATCTCAATCGCTGCTATGAATTTTA 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 TTTGGGAGCTTCTTTGGTTCTCACTCGTTGCTAATATCTCAATCGCTGCTATGAATTTTA 629
Query 313 GTCTCATGTTGAACTCTGTTGGTTTCTACCAGATTTCGAAATTGAGCATGATTCCGGTTG 372
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 630 GTCTTATGTTGAACTCTGTTGGCTTCTACCAGATATCGAAATTGAGCATGATTCCAGTTG 689
Query 373 TTTGCGTGATGGAATGGGTACTACATAGTAAGCATTACTCGAGAGAAGTGAAGGCATCTG 432
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 690 TTTGTGTGATGGAATGGGTTCTACATAGTAAGCATTACTCGAGAGAAGTGAAGGCATCTG 749
Query 433 TCATGGTTGTGGTTGTAGGAGTTGGGATTTGTACTGTGACTGATGTCAAAGTTAATGCCA 492
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 750 TCATGGTTGTTGTTGTAGGAGTTGGGATTTGTACTGTTACTGATGTCAAAGTTAATGCCA 809
Query 493 AAGGTTTCATTTGTGCTTGCACTGCCGTTTTCTCCACTTCTCTCCAGCAGATCTCAATAG 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 AAGGTTTCATTTGTGCTTGCACTGCCGTTTTCTCCACTTCTCTCCAGCAGATCTCAATAG 869
Query 553 GTTCACTGCAGAAGAAATACTCAATCGGATCTTTTGAGTTGCTGAGCAAAACAGCTCCAA 612
|||||||||||||||||||||| |||||||| || ||||||||||| || ||||||||||
Sbjct 870 GTTCACTGCAGAAGAAATACTCGATCGGATCATTCGAGTTGCTGAGTAAGACAGCTCCAA 929
Query 613 TCCAAGCCATTTCACTCCTCATCTTTGGTCCATTTGTTGACTATTTCTTGAGTGGCAGAT 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 TCCAAGCCATTTCACTCCTCATCTTTGGTCCATTTGTTGACTATTTCTTGAGTGGCAGAT 989
Query 673 TCATTTCTACTTACAAGATGACTTATGGCGCAATGTTATGCATTCTTCTCTCCTGCGCAC 732
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 990 TCATTTCGACTTACAAGATGACTTATAGCGCAATGTTATGCATTCTTCTCTCCTGCGCAT 1049
Query 733 TGGCGGTTTTCTGCAACATTAGCCAATATCTCTGCATCGGCAGATTCTCCGCTACTTCCT 792
||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || |
Sbjct 1050 TGGCGGTTTTCTGCAACATAAGCCAATATCTCTGCATCGGAAGATTCTCTGCTACCTCAT 1109
Query 793 TCCAAGTTCTTGGCCACATGAAAACAGTCTGTGTCTTAACACTGGGATGGCTTATCTTTG 852
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1110 TCCAAGTTCTTGGCCACATGAAAACAGTCTGTGTCTTAACATTAGGATGGCTTATCTTTG 1169
Query 853 ATTCCGAGATGACATTCAAGAACATAGCAGGGATGGTCTTAGCTGTGGTGGGAATGGTGA 912
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1170 ATTCGGAGATGACATTCAAGAACATAGCAGGGATGGTCTTAGCCGTGGTGGGAATGGTGA 1229
Query 913 TATACAGTTGGGCAGTCGAGTTAGAGAAACAGAGAAAGTCGAAAGTGACACCGCATGGTA 972
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1230 TATACAGTTGGGCAGTCGAGTTAGAGAAACAGAGAAAGTCGAAAGTGATACCGCATGGTA 1289
Query 973 AACACAGTATGACAGAAGATGAGATTAAACTTCTCAAAGAAGGTATAGAACATATGGATT 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 AACACAGTATGACAGAAGATGAGATTAAACTTCTCAAAGAAGGTATAGAACATATGGATT 1349
Query 1033 TGAAAGACATGGAGCTTGGAAATAATAAAGCATAAATAAAGCT--ATTCAAGAGAAA 1087
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1350 TGAAAGACATGGAGCTTGGAAATAATAAAGCATAAATATAGCTCTATTCAAGAGAAA 1406
> AT1G76670.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr1:28772600-28774901 REVERSE LENGTH=1666
Length=1666
Score = 1131 bits (612), Expect = 0.0
Identities = 908/1050 (86%), Gaps = 23/1050 (2%)
Strand=Plus/Plus
Query 1 TTCAA-TTTCGTAAAATCCAAATGGAGAAGA-CAGAGAACGAGAAGAAGCCATCGGCGGT 58
||||| |||| | |||||||||||||||| | | |||| ||||||||| |||||||||
Sbjct 313 TTCAATTTTC-TCAAATCCAAATGGAGAA-ACCGGAGAGCGAGAAGAA---ATCGGCGGT 367
Query 59 ATCTGACGTCGGAGCATGGGCTATGAACGTAA-CGAGCTCCGTTGGGATCATCATGGCGA 117
||||| ||||| |||||||||||||| |||| | ||||||||||| ||||||||||| |
Sbjct 368 GTCTGATGTCGGTGCATGGGCTATGAATGTAATC-AGCTCCGTTGGAATCATCATGGCTA 426
Query 118 ATAAACAACTAATGTCATCATCTGGTTTCGGCTTTAGCTTCGCGACAAC-TCTCACGGGA 176
||||||| || ||||| || ||||||||||| ||| |||| || ||||| | | ||||||
Sbjct 427 ATAAACAGCTCATGTCTTCCTCTGGTTTCGGTTTTGGCTTTGCTACAACGT-TAACGGGA 485
Query 177 TTTCACTTTGC-TCTCACTGCTCTCGTTGGTATGGTGTCAAACGCGACTGGTTTATCTGC 235
||||||||||| | |||||||||| |||||||||||||||||||| || || |||| ||
Sbjct 486 TTTCACTTTGCAT-TCACTGCTCTTGTTGGTATGGTGTCAAACGCAACGGGACTATCAGC 544
Query 236 ATCTAAGCATGTTCCTCTTTGGGAGCTTCTTTGGTTCTCACTCGTTGCTAATATCTCAAT 295
||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||
Sbjct 545 TTCTAAGCATGTTCCTCTTTGGGAGCTTCTCTGGTTCTCAATTGTTGCTAATATCTCTAT 604
Query 296 CGCTGCTATGAATTTTAGTCTCATGTTGAACTCTGTTGGTTTCTACCAGATTTCGAAATT 355
|||||||||||| |||||||| ||| | ||||||||||| ||||| ||||||||||||||
Sbjct 605 CGCTGCTATGAACTTTAGTCTTATGCTCAACTCTGTTGGCTTCTATCAGATTTCGAAATT 664
Query 356 GAGCATGATTCCGGTTGTTTGCGTGATGGAATGGGTACTACATAGTAAGCATTACTCG-A 414
||||||||||||||| || |||||| |||||||| | |||||||| |||||||| | | |
Sbjct 665 GAGCATGATTCCGGTGGTATGCGTGTTGGAATGGATTCTACATAGCAAGCATTA-TTGTA 723
Query 415 GAGAAGTGAAGGCATCTGTCATGGTTGTGGTTGTAGGAGTTGGGATTTGTACTGTGACTG 474
||||||||| || ||||| |||||||||||| | || ||||||||||||||||||||||
Sbjct 724 AAGAAGTGAAAGCTTCTGTAATGGTTGTGGTTATCGGTGTTGGGATTTGTACTGTGACTG 783
Query 475 ATGTCAAAGTTAATGCCAAAGGTTTCATTTGTGCTTGCACTGCCGTTTTCTCCACTTCTC 534
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 784 ATGTCAAAGTTAATGCCAAAGGTTTCATTTGTGCATGCACTGCCGTTTTCTCCACTTCTC 843
Query 535 TCCAGCAGATCTCAATAGGTTCACTGCAGAAGAAATACTCAATCGGATCTTTTGAGTTGC 594
| |||||||| || ||||| || ||||||||||| |||||| | ||||| ||||| ||||
Sbjct 844 TGCAGCAGATTTCTATAGGCTCTCTGCAGAAGAAGTACTCAGTAGGATCCTTTGAATTGC 903
Query 595 TGAGCAAAACAGCTCCAATCCAAGCCATTTCACTCCTCATCTTTGGTCCATTTGTTGACT 654
|||||||||| || |||||||||||||||||||| ||||||| ||| || ||||||||||
Sbjct 904 TGAGCAAAACTGCACCAATCCAAGCCATTTCACTTCTCATCTGTGGCCCCTTTGTTGACT 963
Query 655 ATTTCTTGAGTGGCAGATTCATTTCTACTTACAAGATGACTTATGGCGCAATGTTATGCA 714
|||| ||||| |||| |||||| ||||||||| ||||||||||||| || || || ||||
Sbjct 964 ATTTGTTGAGCGGCAAATTCATATCTACTTACCAGATGACTTATGGTGCCATCTTCTGCA 1023
Query 715 TTCTTCTCTCCTGCGCACTGGCGGTTTTCTGCAACATTAGCCAATATCTCTGCATCGGCA 774
||||||||||||| ||| | || |||||||| ||||| |||||||||||||||||||| |
Sbjct 1024 TTCTTCTCTCCTGTGCATTAGCCGTTTTCTGTAACATAAGCCAATATCTCTGCATCGGAA 1083
Query 775 GATTCTCCGCTACTTCCTTCCAAGTTCTTGGCCACATGAAAACAGTCTGTGTCTTAACAC 834
||||||| || || || ||||||||||| ||||||||||||||||| || ||| | |||
Sbjct 1084 GATTCTCAGCGACATCTTTCCAAGTTCTAGGCCACATGAAAACAGTATGCGTCCTCACAT 1143
Query 835 TGGGATGGCTTATCTTTGATTCCGAGATGACATTCAAGAACATAGCAGGGATGGTCTTAG 894
| ||||||||| ||||||||||||||||||||||||||||||| || ||||||| | |||
Sbjct 1144 TAGGATGGCTTCTCTTTGATTCCGAGATGACATTCAAGAACATCGCCGGGATGGCCATAG 1203
Query 895 CTGTGGTGGGAATGGTGATATACAGTTGGGCAGTCGAGT-TAGAGAAACAGAGAAA-GTC 952
| | || ||||||||||| || |||||||| || || | ||||||||||||| || | |
Sbjct 1204 CCATTGTTGGAATGGTGATCTATAGTTGGGCTGTTGA-TATAGAGAAACAGAGGAACG-C 1261
Query 953 GAAAGTGA-CACCGCATGGTAAACACAGTATGACAGAAGATGAGATTAAACTTCTCAAAG 1011
||||| | | || || || |||||||||||||| |||||||||||||| || |||||||
Sbjct 1262 -AAAGTCAACGCCACACGGCAAACACAGTATGACCGAAGATGAGATTAAGCTACTCAAAG 1320
Query 1012 AAGGTA-TAGAACATATGGATTTGAAAGAC 1040
|||| | | || ||||| || |||||||||
Sbjct 1321 AAGG-AGTTGAGCATATCGACTTGAAAGAC 1349
> AT4G27052.1 | Symbols: | unknown pseudogene | chr4:13579080-13579310
FORWARD LENGTH=231
Length=231
Score = 119 bits (64), Expect = 6e-26
Identities = 88/98 (90%), Gaps = 7/98 (7%)
Strand=Plus/Plus
Query 423 AAGGCATCTGTCATGGTTGTGGTTGTA-G-GAGTTGGGATTTGTACTGTGACTGATGTCA 480
||||||||||| ||||||||||||||| | ||||||||||||||| | ||||||| |
Sbjct 85 AAGGCATCTGTGATGGTTGTGGTTGTAGGAGAGTTGGGATTTGTA----G-CTGATGTTA 139
Query 481 AAGTTAATGCCAAAGGTTTCATTTGTGCTTGCACTGCC 518
| ||||||||||||||||||||||||||||||||||||
Sbjct 140 AGGTTAATGCCAAAGGTTTCATTTGTGCTTGCACTGCC 177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53262778245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5