BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921083
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21140.1 | Symbols: | Vacuolar iron transporter (VIT) famil... 1033 0.0
> AT1G21140.1 | Symbols: | Vacuolar iron transporter (VIT) family
protein | chr1:7404383-7405281 FORWARD LENGTH=899
Length=899
Score = 1033 bits (559), Expect = 0.0
Identities = 607/631 (96%), Gaps = 0/631 (0%)
Strand=Plus/Plus
Query 15 ACTTAACCATGGAATCACACAACGTGAACAACAGCTCGAACCTAGACATGGAGATGGATC 74
|||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 74 ACTTTACCATGGAATCACACAACGTGAGCAACAGCTTGAACCTAGACATGGAGATGGATC 133
Query 75 AAGAAAAGGCTTTCGACTACTCCAAAAGAGCTCAATGGCTAAGAGCCGCCGTTCTTGGTG 134
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 134 AAGAAAAGGCTTTCGACTACTCCAAAAGAGCTCAATGGCTAAGAGCCGCCGTGCTTGGTG 193
Query 135 CCAACGACGGTCTTGTCTCCACGGCTTCACTTATGATGGGTGTCGGTGCCGTAAAGCAAG 194
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 194 CCAACGACGGTCTTGTCTCGACGGCTTCACTTATGATGGGTGTCGGTGCGGTAAAGCAAG 253
Query 195 ACGTCAAAGTCATGATCTTATCTGGTTTCGCCGGTTTGGTCGCCGGTGCTTGTAGCATGG 254
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 254 ACGTCAAAGTCATGATCTTATCTGGTTTCGCCGGTTTGGTCGCCGGAGCTTGTAGCATGG 313
Query 255 CCATCGGAGAGTTTGTATCCGTTTACTCTCAGTACGACATCGAGGTGGCTCAGATGAAGA 314
| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 314 CTATCGGAGAGTTTGTCTCCGTTTACTCTCAGTACGACATCGAGGTGGCTCAAATGAAGA 373
Query 315 GAGAAAACGGAGGGCAAGTAGAGAAAGAGAAGCTTCCGAGTCCGATGCAAGCGGCTGCGG 374
|||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 374 GAGAGAACGGAGGACAAGTGGAGAAAGAGAAGCTTCCGAGTCCCATGCAAGCGGCTGCCG 433
Query 375 CATCTGCGTTAGCGTTTTCTTTGGGGGCGATTGTCCCATTAATGGCGGCTGCGTTTGTGA 434
| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 434 CGTCTGCGTTAGCGTTTTCTTTGGGTGCGATTGTGCCTTTAATGGCGGCTGCGTTTGTGA 493
Query 435 AAGACTATCACGTGAGAATCGGAGCGATCGTGGCGGCGGTGACGTTGGCGTTAGTGATGT 494
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 494 AAGACTATCACGTGAGAATAGGAGCGATCGTGGCGGCGGTGACATTGGCGTTAGTGATGT 553
Query 495 TTGGGTGGTTAGGAGCGGTTTTGGGGAAAGCACCGGTGTTTAAGTCGTCGGCTAGGGTTT 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 TTGGGTGGTTAGGAGCGGTTTTGGGGAAAGCACCGGTGTTTAAGTCGTCGGCTAGGGTTT 613
Query 555 TGATTGGAGGTTGGTTAGCTATGGCCGTTACTTTTGGTTTGACAAAACTGATTGGGACAC 614
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 TGATTGGAGGATGGTTAGCTATGGCCGTTACTTTTGGTTTGACAAAACTGATTGGGACAC 673
Query 615 ATAGTCTGTGATATGTTTGTGTTTAGTTACA 645
|||||||||||||||||| |||||| |||||
Sbjct 674 ATAGTCTGTGATATGTTTCTGTTTACTTACA 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31145171140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5