BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921104

Length=306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G21327.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   411    3e-114


> AT1G21327.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:7471947-7472210 
REVERSE LENGTH=264
Length=264

 Score =  411 bits (222),  Expect = 3e-114
 Identities = 250/264 (95%), Gaps = 0/264 (0%)
 Strand=Plus/Plus

Query  23   ATGTCACAACCAAAAACAAATGGAAGAACCTTTGGATTCCTGAAACCATTTATGCGGCTG  82
            ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGTCACAACCAAAAACAAGTGGAAGAACTTTTGGATTCCTGAAACCATTTATGCGGCTG  60

Query  83   TGTATGTGCTTTGACGTGGCGGTGGAAGGTGATCAACGAGGAAGATCTAAGAAAGTGACA  142
            |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct  61   TGTATGTGCTTTGACGTGGCGGCGGAAGGTGAGCAACGAGGAAGATCTAAGAAAGTGACA  120

Query  143  AGGAAGAGTAGCTCCATCCACTCAATAAAATCCTCTCCAGCTTATTCTTCCGGCAGTAGT  202
            |||||||| || |||||||||||||||||||| ||||| ||| ||||||||||  |||||
Sbjct  121  AGGAAGAGCAGTTCCATCCACTCAATAAAATCTTCTCCGGCTAATTCTTCCGGTTGTAGT  180

Query  203  TCGATGGTAGATGAAGACAGGGATGAGAAGATTAAAGATGTTATCCTTTATTGTAAGATG  262
            ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  181  TCGATGGTAGAGGAAGACAGAGATGAGAAGATTAAAGATGTTATCCTCTATTGTAAGATG  240

Query  263  AATTCACCAATTAATTTCCGCTGA  286
            ||||||||||||||||||||||||
Sbjct  241  AATTCACCAATTAATTTCCGCTGA  264



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14175505218


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5