BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921105
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21340.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 1188 0.0
AT4G00940.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 111 8e-24
> AT1G21340.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr1:7476087-7476869 FORWARD LENGTH=783
Length=783
Score = 1188 bits (643), Expect = 0.0
Identities = 741/788 (94%), Gaps = 7/788 (1%)
Strand=Plus/Plus
Query 22 ATGTTGCCGTACATTGGACACAACAGCTACCTGCAGCAGCACCAGTTTCCGTCGCCGGAG 81
||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 1 ATGTTGCCGTACATTGGACACAACAGCTA-C--CAGCAGCACCAGTTTCCGTTGCCGGAG 57
Query 82 ATGGAAATTCCGGAGAAATGGAAGCTTTCGTATGGACAAGAGGCTACTACTGCTCCGGCT 141
||||||||||||||||| ||||||||||| || | ||||||||||| |||||||||||||
Sbjct 58 ATGGAAATTCCGGAGAAGTGGAAGCTTTCTTACGAACAAGAGGCTATTACTGCTCCGGCT 117
Query 142 TGTCCTCGTTGTGCATCGTCCAACACCAAGTTTTGTTATTACAACAACTACAGCTTGTCT 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TGTCCTCGTTGTGCATCGTCCAACACCAAGTTTTGTTATTACAACAACTACAGCTTGTCT 177
Query 202 CAGCCTAGATACTTCTGCAAGGGTTGCCGTCGTTACTGGACTAAAGGCGGTTCTCTCCGT 261
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 178 CAGCCTAGATACTTCTGCAAGGGTTGCCGTCGTTACTGGACGAAAGGCGGTTCTCTCCGC 237
Query 262 AACATTCCTGTAGGTGGAGGCTGTCGCAAGAGAAGCCGCAGCAGACAGAACAGTCACAAA 321
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 238 AACATTCCTGTAGGTGGAGGCTGTCGCAAGAGAAGTCGAAGCAGACAGAACAGTCACAAA 297
Query 322 AGGTTTGGTCGGAACGAGAATCGGCCTGATGGTCTTAATAACCAAGATGATGGATTACAG 381
|||||||| ||||||||||||||||| |||||||||| |||||||||||||||||| |||
Sbjct 298 AGGTTTGGCCGGAACGAGAATCGGCCAGATGGTCTTATTAACCAAGATGATGGATTCCAG 357
Query 382 TCCAGCCCTCCTGGTCCTGATATTGATTTGGCTGCGGTTTTCGCACAGTACGTGACTGAT 441
||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||
Sbjct 358 TCCAGCCCTCCTGGTTCTGATATTGATTTGGCTGCGGTTTTCGCACAATATGTGACTGAT 417
Query 442 GGGAGCCCTTCTAGTACAGATAATACTACTGGATCCGAGCAAGATTCACCGATAACAACA 501
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 418 CGGAGCCCTTCTAGTACAGATAATACTACTGGATCCGATCAAGATTCACCGATAACAACA 477
Query 502 ACAACTCATACTTTAGATTCCTTGAGCTGGGATATCTGCCAAGAAACTGATGTGGATCTT 561
|| |||||| ||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 478 ACCACTCATGCTTTAGAATCTTTGAGTTGGGATATCTGCCAAGAAACTGATGTGGATCTT 537
Query 562 GGATTCTACGAGGAGTTCAATAATCTAAC-CAAGAAGACCGAAGAAGATCAACGAGGG-T 619
|||||||||| ||| |||||||||||||| || ||||||| |||| |||||| || | |
Sbjct 538 GGATTCTACGGGGAATTCAATAATCTAACTCA-GAAGACCAAAGAGGATCAA-GAAGTAT 595
Query 620 TTGGTCAACTTCTTGAAGATGATCGAGAGGAGATCTTCGAGTTCCAGGGTTTACTCGATG 679
||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TTGGTCAGTTTCTCCAAGAAGATCGAGAGGAGATCTTCGAGTTCCAGGGTTTACTCGATG 655
Query 680 ACAAAGAGATTCAAGAGATCCTGGAATGTTCATTCTCAGAGGAGCCAGACCAGTTAATTT 739
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 656 ACAAAGAGATTCAAGAGATCCTGGAATGCTCATTCTCAGAGGAGCCAGACCAGTTAGTTT 715
Query 740 CTCAGGGGAGCTTCATGGTCAATGGTGATAATTGGAGTTCAACAGATCTTACCAGATTCG 799
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 716 CTCAGGGGAGCTTCATGATCAATGGTGATAACTGGAGTTCAACAGATCTTACCAGGTTCG 775
Query 800 GGATTTGA 807
||||||||
Sbjct 776 GGATTTGA 783
> AT4G00940.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr4:403320-404810 REVERSE LENGTH=970
Length=970
Score = 111 bits (60), Expect = 8e-24
Identities = 101/121 (83%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 162 CAACACCAAGTTTTGTTATTACAACAACTACAGCTT-GTCTCAGCCTAGATACTTCTGCA 220
|||||||||||||||||||||||||||||||||||| | | |||||||| ||||| || |
Sbjct 313 CAACACCAAGTTTTGTTATTACAACAACTACAGCTTAG-CACAGCCTAGGTACTTGTGTA 371
Query 221 AGGGTTGCCGTCGTTACTGGACTAAAGGCGGTTCTCTCCGTAACATTCCTGTAGGTGGAG 280
|| ||| || | || |||||| |||| || |||||||||||| | || ||||| ||||
Sbjct 372 AGTCTTGTCGGAGATATTGGACTGAAGGTGGCTCTCTCCGTAACGTCCCCGTAGGCGGAG 431
Query 281 G 281
|
Sbjct 432 G 432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40287785894
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5