BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921118
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21460.1 | Symbols: SWEET1, AtSWEET1 | Nodulin MtN3 family p... 1247 0.0
> AT1G21460.1 | Symbols: SWEET1, AtSWEET1 | Nodulin MtN3 family
protein | chr1:7511850-7513361 REVERSE LENGTH=1004
Length=1004
Score = 1247 bits (675), Expect = 0.0
Identities = 749/785 (95%), Gaps = 3/785 (0%)
Strand=Plus/Plus
Query 3 CACCTTTGAGATCAAAAGATGAACATCGCTCACACCATCTTCGGCGTTTTCGGAAATGCA 62
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 63 CACCTTTGAGATCAAAAGATGAACATCGCTCACACTATCTTCGGCGTTTTCGGAAATGCA 122
Query 63 ACTGCTCTGTTTCTTTTCTTGGCTCCTTCGATAACATTCAAGAGAATCATCAAGAACAAA 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 ACTGCTCTGTTTCTTTTCTTGGCTCCTTCGATAACATTCAAGAGAATCATCAAGAACAAA 182
Query 123 TCCACCGAACAATTCTCTGGTATCCCTTACCCAATGACTCTCCTCAACTGTCTCCTCTCC 182
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 183 TCCACTGAACAATTCTCTGGTATCCCTTATCCAATGACTCTCCTCAACTGTCTCCTCTCT 242
Query 183 GCTTGGTATGGACTTCCCTTTGTGTCAAAAGACAACACACTTGTGAGCACAATCAATGGA 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GCTTGGTATGGACTTCCCTTTGTGTCAAAAGACAACACACTTGTGAGCACAATCAATGGC 302
Query 243 ACAGGAGCAGTAATCGAAACAGTCTACGTGTTGATCTTCCTCTTCTACGCACCAAAGAAA 302
||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 303 ACAGGAGCAGTGATCGAAACAGTCTACGTGTTAATCTTTCTTTTCTACGCACCAAAGAAG 362
Query 303 GAGAAAGTTAAGATCTTTGGTATCTTCTCTTGCGTTTTGGCCGTATTCGCAACAGTAGCT 362
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 363 GAGAAAATTAAGATCTTTGGTATCTTCTCTTGCGTTTTGGCTGTATTCGCAACAGTAGCT 422
Query 363 CTTGTCTCTCTCTTTGCTCTCCATGGAAATGGTAGAAAACTCTTCTGTGGTCTCGCAGCT 422
|| ||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||
Sbjct 423 CTCGTCTCTCTCTTTGCTCTTCAAGGAAACGGTAGAAAACTCTTTTGTGGTCTCGCAGCT 482
Query 423 ACTGTTTTCTCCATCATCATGTACGCTTCTCCACTCTCCATCATGAGATTGGTGATAAAG 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 483 ACTGTTTTCTCCATCATCATGTACGCTTCTCCACTCTCCATCATGAGATTGGTGGTAAAG 542
Query 483 ACGAAGAGTGTTGAGTTTATGCCATTCTTTTTGTCTCTCTTTGTCTTCCTCTGTGGTACT 542
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 543 ACGAAGAGTGTAGAGTTTATGCCATTCTTTTTGTCACTCTTTGTCTTCCTCTGTGGTACT 602
Query 543 TCGTGGTTCGTCTATGGTCTTATCGGTCGTGACCCTTTTGTTGCAATACCAAATGGGTTT 602
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 603 TCGTGGTTCGTCTATGGTCTAATCGGTCGTGACCCTTTTGTTGCAATCCCAAATGGGTTT 662
Query 603 GGATGTGCATTAGGGACACTGCAATTGATACTATACTTCATCTACTGTGGAAACAAAGGC 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GGATGTGCATTAGGGACACTGCAATTGATACTATACTTCATCTACTGTGGAAACAAAGGA 722
Query 663 CAGAAATCTGCGGATGCTGAGAAAGATGAGAAGTCGGTGGAGATGAAAGGTGATGAGAAG 722
|||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||||||
Sbjct 723 GAGAAATCTGCAGATGCTCAGAAAGATGAGAAGTCAGTGGAGATGAAAGATGATGAGAAG 782
Query 723 AAGCACCATGTGGTTAATGGGAAGCAAGACCTTCAAGTTTGAA-G--CTTTTGAAGATGA 779
||||| ||||||||||||| ||||||||||||||||||| || | ||||||| |||||
Sbjct 783 AAGCAGAATGTGGTTAATGGAAAGCAAGACCTTCAAGTTTAAAAGAGCTTTTGAGGATGA 842
Query 780 TTTGG 784
|||||
Sbjct 843 TTTGG 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38127717573
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5