BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921132 Length=1225 Score E Sequences producing significant alignments: (Bits) Value AT1G21560.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1099 0.0 > AT1G21560.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1). | chr1:7554784-7557056 FORWARD LENGTH=1684 Length=1684 Score = 1099 bits (595), Expect = 0.0 Identities = 702/754 (93%), Gaps = 5/754 (1%) Strand=Plus/Plus Query 475 AAGCGGGTTTCAGATTAAGGCGAAGAGAGAGTCCTGTGACTGAGAAGAGTGTTGAAGCAA 534 |||| ||||||| |||||||||||||||||||| ||||| | |||||||||||||||||| Sbjct 684 AAGCCGGTTTCAAATTAAGGCGAAGAGAGAGTCTTGTGAGTCAGAAGAGTGTTGAAGCAA 743 Query 535 TGCTTATTACAAGTCATGTGAAAAGAAACT-CGAA-AC-ATAGTTTCGATGCTAGCGAGA 591 ||||||||||||||||||||| |||||||| | || || ||| | ||| |||||||||| Sbjct 744 TGCTTATTACAAGTCATGTGAGAAGAAACTCCCAACACAATAATGGCGACGCTAGCGAGA 803 Query 592 AGGAGAA-TTTGAAGGATCTCATGGTATTGGATGAGGGTTACAGATCTTATCTCACATGG 650 ||||||| |||| ||||| ||| ||||||||||||| ||||||||||||||||| | || Sbjct 804 AGGAGAATTTTG-AGGATGACATTGTATTGGATGAGGTTTACAGATCTTATCTCAAACGG 862 Query 651 TTAGTGGAGAATTCGAAAAGTTCAAGAACTAATCCTGAAAAAGAGAGACAAGTAAAGTGT 710 |||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 863 TTAGTGGAAAATTCGAAAAGTTCAAGAACTAATCCTGAAAAAGAGATAAAAGTAAAGTGT 922 Query 711 GAGGAGGATTATACAGTGTCTTTGTCCGATTCTGATTCTGATATTATTGTGGTTGGAGAT 770 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 923 GAGGAGGATCATACAGTGTCTTTGTCTGATTCTGATTCTGATATTATTGTGGTTGGAGAT 982 Query 771 CGTCCGTTTCTGGGTGAAGAGGATTCTCCATTTGTGCCATCAAAAAGTTATAACGTGATT 830 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 983 TGTCCGTTTCTGGAAGAAGAGGATTCTCCATTTGTGCCATCAAAAAGTTATAAAGTGATT 1042 Query 831 GATTTGGATGAAGAGAGCAGTGATCAACGCAATTCTTGGTTTAGGAAGGAGATAATGAAT 890 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1043 GATTTGGATGAAGAGAGCAGTGATCAACGCAATTCTTGGTTTAGGAGGGAGATAATGAAT 1102 Query 891 GTTTTGAAGCAGCCATACACTGTAACAGAGCTCAAGGAACTTCACAATGAAGCATCGGTG 950 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 1103 GTTCTGAAGCAGCCATACACTGTAACAGAGCTCAAGGAACTTCACAAGGAAGCATCAGTG 1162 Query 951 CGTAGAGTGTCAAGCAGACATATAGAACTACGAGATGGAACAGAGTTTAGCTTTCCAACG 1010 | | |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1163 CATGGAGTGTCATCCAGACATATAGAACTACGAGATGGAACAGAGTTTAGCTTTCCAACG 1222 Query 1011 AATAAAAAGACACCTTCATATCTCGATGGGTATCCAGACTTCAAAAAGCAGTACCTTGAA 1070 || ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1223 AACAAAAAGAAACCTTCATATCTCGATAGGTATCCAGACTTCAAAAAGCAGTACCTTGAC 1282 Query 1071 TCTTTACGTGAAGATGATGAGCATAAAGCTCTGAACCTGTTGCGCGGGTTTATCTTTTAT 1130 ||||| |||||| | ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1283 TCTTTGCGTGAAAAGGATGAGCGTAAAGCTCTGAACCTGTTGCGCGGGTTTATCTTTTAT 1342 Query 1131 TTAACGAATGTGGTACGTGATGATGCATTCAAACCATGGCTCGATCAAGAATGTTTGAAG 1190 ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1343 ATAACGAATGTGGTTCGTGATGATGCATTCAAACCGTGGCTCGATCAAGAATGTTTGAAG 1402 Query 1191 ATCAGATGTTTCTGACAAAAGGGTATCAGCACTT 1224 ||||||||| ||||||||||| |||||||||||| Sbjct 1403 ATCAGATGTGTCTGACAAAAGAGTATCAGCACTT 1436 Score = 505 bits (273), Expect = 5e-142 Identities = 413/473 (87%), Gaps = 39/473 (8%) Strand=Plus/Plus Query 18 AAGATGAGAAATATGATGAATTCTGCTGCTGCAATGAGAGCTGTGAAGAAGGAGTTTATT 77 |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 215 AAGATGAGAACTTTGATGAATTCTGCTGCTACAATGAGAGCTGTGAAGAAGGAGTTTATT 274 Query 78 GTGATGGACTTAGATG--G-TAATGATGAAGATGTTCGTTGTGGTAAAGTGAAAGAAGAG 134 || || |||||||||| | ||| |||||||||||||||||||||||||||||||||||| Sbjct 275 GTAATAGACTTAGATGCTGATAAAGATGAAGATGTTCGTTGTGGTAAAGTGAAAGAAGAG 334 Query 135 TATATGATGGATGCTGAGCAATTTAATTCTTCTACAGATTCTGGCAAAACTAATCCTTCC 194 |||||||||||||||| |||| || || | | | | | | ||| Sbjct 335 TATATGATGGATGCTG-GCAA---AA--CT---A-A--T-C---C-----T--TCC---- 367 Query 195 AACATGCAACAGATTGTTTCTGCTGTTGCTTCtgatgatgatgatgatgatgatgatgat 254 ||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 368 AACATCCAACAGGTTGTTTCTGCTGTTGCTTCTGATGATGATGGTGATGATGATGATGAC 427 Query 255 TGGGGTACCAAAATTGATTATCAGTATATTAAGTTGTTGGATAGTTTCAGAGAAGATGGA 314 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 428 TGGGGTACCAAAATGGATTATCAGTATATAAAGTTGTTGGATAGTTTCAGAGAAGATGGA 487 Query 315 ACTTCAAATCTGAGTGACAATCCACTCAGGTCTATCAGGTATGAAGTAGATAATGGAGGA 374 | || ||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| Sbjct 488 AGTTTAAATCTGAGTGACAATCCACTAAGGTCTATTAGGTATGAAGTAGATAATGGTGGA 547 Query 375 TACGACAAGCGGGAATTTAAAGCA------A-A--TAAGCGGAGTAGAGAAGATCGAAAC 425 || ||||||||||| ||||||||| | | ||||||||||||||||||||||||| Sbjct 548 TATGACAAGCGGGAGTTTAAAGCAGTGTTTACAAATAAGCGGAGTAGAGAAGATCGAAAC 607 Query 426 ACTATTCGTGTGAGCAAGAAGAATGTTGAGCCAAAGCCTCCTCATGTTCAAGC 478 ||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 608 ACTATTCGTGTAACCAAGAAGAATGTTGAGCCAAAGCCTCCTCATGTTCAAGC 660 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60190453455 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5