BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921132
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21560.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1099 0.0
> AT1G21560.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1).
| chr1:7554784-7557056 FORWARD LENGTH=1684
Length=1684
Score = 1099 bits (595), Expect = 0.0
Identities = 702/754 (93%), Gaps = 5/754 (1%)
Strand=Plus/Plus
Query 475 AAGCGGGTTTCAGATTAAGGCGAAGAGAGAGTCCTGTGACTGAGAAGAGTGTTGAAGCAA 534
|||| ||||||| |||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 684 AAGCCGGTTTCAAATTAAGGCGAAGAGAGAGTCTTGTGAGTCAGAAGAGTGTTGAAGCAA 743
Query 535 TGCTTATTACAAGTCATGTGAAAAGAAACT-CGAA-AC-ATAGTTTCGATGCTAGCGAGA 591
||||||||||||||||||||| |||||||| | || || ||| | ||| ||||||||||
Sbjct 744 TGCTTATTACAAGTCATGTGAGAAGAAACTCCCAACACAATAATGGCGACGCTAGCGAGA 803
Query 592 AGGAGAA-TTTGAAGGATCTCATGGTATTGGATGAGGGTTACAGATCTTATCTCACATGG 650
||||||| |||| ||||| ||| ||||||||||||| ||||||||||||||||| | ||
Sbjct 804 AGGAGAATTTTG-AGGATGACATTGTATTGGATGAGGTTTACAGATCTTATCTCAAACGG 862
Query 651 TTAGTGGAGAATTCGAAAAGTTCAAGAACTAATCCTGAAAAAGAGAGACAAGTAAAGTGT 710
|||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 863 TTAGTGGAAAATTCGAAAAGTTCAAGAACTAATCCTGAAAAAGAGATAAAAGTAAAGTGT 922
Query 711 GAGGAGGATTATACAGTGTCTTTGTCCGATTCTGATTCTGATATTATTGTGGTTGGAGAT 770
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 923 GAGGAGGATCATACAGTGTCTTTGTCTGATTCTGATTCTGATATTATTGTGGTTGGAGAT 982
Query 771 CGTCCGTTTCTGGGTGAAGAGGATTCTCCATTTGTGCCATCAAAAAGTTATAACGTGATT 830
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 983 TGTCCGTTTCTGGAAGAAGAGGATTCTCCATTTGTGCCATCAAAAAGTTATAAAGTGATT 1042
Query 831 GATTTGGATGAAGAGAGCAGTGATCAACGCAATTCTTGGTTTAGGAAGGAGATAATGAAT 890
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1043 GATTTGGATGAAGAGAGCAGTGATCAACGCAATTCTTGGTTTAGGAGGGAGATAATGAAT 1102
Query 891 GTTTTGAAGCAGCCATACACTGTAACAGAGCTCAAGGAACTTCACAATGAAGCATCGGTG 950
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1103 GTTCTGAAGCAGCCATACACTGTAACAGAGCTCAAGGAACTTCACAAGGAAGCATCAGTG 1162
Query 951 CGTAGAGTGTCAAGCAGACATATAGAACTACGAGATGGAACAGAGTTTAGCTTTCCAACG 1010
| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 CATGGAGTGTCATCCAGACATATAGAACTACGAGATGGAACAGAGTTTAGCTTTCCAACG 1222
Query 1011 AATAAAAAGACACCTTCATATCTCGATGGGTATCCAGACTTCAAAAAGCAGTACCTTGAA 1070
|| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1223 AACAAAAAGAAACCTTCATATCTCGATAGGTATCCAGACTTCAAAAAGCAGTACCTTGAC 1282
Query 1071 TCTTTACGTGAAGATGATGAGCATAAAGCTCTGAACCTGTTGCGCGGGTTTATCTTTTAT 1130
||||| |||||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1283 TCTTTGCGTGAAAAGGATGAGCGTAAAGCTCTGAACCTGTTGCGCGGGTTTATCTTTTAT 1342
Query 1131 TTAACGAATGTGGTACGTGATGATGCATTCAAACCATGGCTCGATCAAGAATGTTTGAAG 1190
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1343 ATAACGAATGTGGTTCGTGATGATGCATTCAAACCGTGGCTCGATCAAGAATGTTTGAAG 1402
Query 1191 ATCAGATGTTTCTGACAAAAGGGTATCAGCACTT 1224
||||||||| ||||||||||| ||||||||||||
Sbjct 1403 ATCAGATGTGTCTGACAAAAGAGTATCAGCACTT 1436
Score = 505 bits (273), Expect = 5e-142
Identities = 413/473 (87%), Gaps = 39/473 (8%)
Strand=Plus/Plus
Query 18 AAGATGAGAAATATGATGAATTCTGCTGCTGCAATGAGAGCTGTGAAGAAGGAGTTTATT 77
|||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 215 AAGATGAGAACTTTGATGAATTCTGCTGCTACAATGAGAGCTGTGAAGAAGGAGTTTATT 274
Query 78 GTGATGGACTTAGATG--G-TAATGATGAAGATGTTCGTTGTGGTAAAGTGAAAGAAGAG 134
|| || |||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 275 GTAATAGACTTAGATGCTGATAAAGATGAAGATGTTCGTTGTGGTAAAGTGAAAGAAGAG 334
Query 135 TATATGATGGATGCTGAGCAATTTAATTCTTCTACAGATTCTGGCAAAACTAATCCTTCC 194
|||||||||||||||| |||| || || | | | | | | |||
Sbjct 335 TATATGATGGATGCTG-GCAA---AA--CT---A-A--T-C---C-----T--TCC---- 367
Query 195 AACATGCAACAGATTGTTTCTGCTGTTGCTTCtgatgatgatgatgatgatgatgatgat 254
||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 368 AACATCCAACAGGTTGTTTCTGCTGTTGCTTCTGATGATGATGGTGATGATGATGATGAC 427
Query 255 TGGGGTACCAAAATTGATTATCAGTATATTAAGTTGTTGGATAGTTTCAGAGAAGATGGA 314
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 428 TGGGGTACCAAAATGGATTATCAGTATATAAAGTTGTTGGATAGTTTCAGAGAAGATGGA 487
Query 315 ACTTCAAATCTGAGTGACAATCCACTCAGGTCTATCAGGTATGAAGTAGATAATGGAGGA 374
| || ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 488 AGTTTAAATCTGAGTGACAATCCACTAAGGTCTATTAGGTATGAAGTAGATAATGGTGGA 547
Query 375 TACGACAAGCGGGAATTTAAAGCA------A-A--TAAGCGGAGTAGAGAAGATCGAAAC 425
|| ||||||||||| ||||||||| | | |||||||||||||||||||||||||
Sbjct 548 TATGACAAGCGGGAGTTTAAAGCAGTGTTTACAAATAAGCGGAGTAGAGAAGATCGAAAC 607
Query 426 ACTATTCGTGTGAGCAAGAAGAATGTTGAGCCAAAGCCTCCTCATGTTCAAGC 478
||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 608 ACTATTCGTGTAACCAAGAAGAATGTTGAGCCAAAGCCTCCTCATGTTCAAGC 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60190453455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5