BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921142
Length=2992
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21640.2 | Symbols: NADK2 | NAD kinase 2 | chr1:7588414-7592... 3369 0.0
> AT1G21640.2 | Symbols: NADK2 | NAD kinase 2 | chr1:7588414-7592831
FORWARD LENGTH=3474
Length=3474
Score = 3369 bits (1824), Expect = 0.0
Identities = 2013/2104 (96%), Gaps = 13/2104 (1%)
Strand=Plus/Plus
Query 10 GTT-TTTCTCTCATGTTCCTATGCTTTTACCCTTGCCACGTACCTATCATGAGTCGCCTT 68
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 GTTGTTTCTCTCATGTTCCTATGCTTTTGCCCTTGCCACGTACCTATCATGAGTCGCCTT 360
Query 69 TCTCCGGCCACCGGAATCTCTTCCCGCCTCCACTGCTCCGTTGATTTGAGTTCCGATGGA 128
||||||||||||||||||||||||||||||| || |||| ||| ||||||||||||||||
Sbjct 361 TCTCCGGCCACCGGAATCTCTTCCCGCCTCCGCTTCTCCATTGGTTTGAGTTCCGATGGA 420
Query 129 CGATTACTTCCGTTCGGGTT-CGGATTTCGGAGAAACGATGTCCCGTTTAAACGCCGCTT 187
|||||| |||| ||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 421 CGATTAATTCCCTTCGGATTCCGG-TTTCGGAGAAACGATGTCCCGTTTAAACGCCGCTT 479
Query 188 GAGATTTGTGATCAGAGCGCAGCTCTCTGAGGCTTTTTCTCCTGATTTAGGTTTGGATTC 247
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 480 GAGATTTGTGATCAGAGCGCAGCTCTCTGAAGCTTTTTCTCCCGATTTAGGTTTGGATTC 539
Query 248 TCAGGCTGTGAAATCCCGGGATACATCAAACTTGCCTTGGATTGGTCCAGTTCCAGGGGA 307
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCAGGCTGTGAAATCCCGCGATACATCAAACTTGCCTTGGATTGGTCCAGTTCCAGGGGA 599
Query 308 CATTGCTGAGGTTGAGGCATATTGTAGAATTTTTCGATCAGCTGAGCGACTACATGGAGC 367
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 600 CATTGCTGAGGTTGAGGCGTATTGTAGAATTTTTAGATCAGCTGAGCGACTACATGGAGC 659
Query 368 GTTGATGGAGACACTGTGCAACCCTTTGACTGGTGAATGTCGCGTACCCTATGATTTCTC 427
||||||||||||||| ||||||||| |||||||||||||||| ||||| |||||||||||
Sbjct 660 GTTGATGGAGACACTATGCAACCCTGTGACTGGTGAATGTCGAGTACCGTATGATTTCTC 719
Query 428 ACCCGAGGAAAAACCTTTGTTGGAGGACAAAATAGTATCAGTGCTTGGTTGTATATTATC 487
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACCGGAGGAAAAACCATTGTTGGAGGACAAAATAGTATCAGTGCTTGGTTGTATATTATC 779
Query 488 TCTTTTAAACAAAGGAAGGAAAGAAATTCTCTCTGGGAGGTCATCTTCTATGAATTCATT 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCTTTTAAACAAAGGAAGGAAAGAAATTCTCTCTGGGAGGTCATCTTCTATGAATTCATT 839
Query 548 TAATTTGGATGATGTTGGGGTTGCGGAGGAATCTCTTCCACCACTTGCTGTTTTTAGAGG 607
|||||||||||||||||||||||| ||||| || |||||||||||||||||||| || ||
Sbjct 840 TAATTTGGATGATGTTGGGGTTGCAGAGGAGTCGCTTCCACCACTTGCTGTTTTCAGGGG 899
Query 608 TGAAATGAAACGCTGTTGTGAAAGCTTACACATTGCCCTTGAGAATTATCTGACACCGGA 667
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 900 TGAAATGAAACGGTGTTGTGAAAGCTTACACATTGCTCTTGAGAATTATCTGACGCCGGA 959
Query 668 TGATGAAAGAAGTGGAATTGTCTGGAGGAAATTACAGAAGCTTAAGAATGTCTGCTACGA 727
|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 960 TGATGAGAGAAGTGGAATTGTTTGGAGGAAATTACAGAAGCTTAAAAATGTCTGCTACGA 1019
Query 728 CGCAGGTTTTCCACGCAGTGATAACTATCCTTGCCAAACACTTTTTGCGAATTGGGACCC 787
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 CGCTGGTTTTCCACGCAGTGATAACTATCCTTGTCAAACACTTTTTGCGAATTGGGACCC 1079
Query 788 TATTTATTCGTCAGATACGAAAGAGGATATTGGTTCCTACGAGTCTGAGATTGCATTTTG 847
|||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1080 TATTTACTCGTCAAATACGAAAGAGGATATTGATTCCTACGAGTCTGAGATTGCATTTTG 1139
Query 848 GAGGGGAGGACAGGTAACCCAAGAAGGATTGAAGTGGTTAATCGAAAATGGATTTAAAAC 907
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1140 GAGGGGAGGACAGGTAACCCAAGAAGGATTGAAGTGGTTGATAGAAAACGGATTTAAAAC 1199
Query 908 AATTGTTGACCTGAGAGCTGAACA-CGTGAAGGATACATTCTACCAGGCTGCACTTGATG 966
|||||||||||||||||||||| | ||| |||||||||||||||||| | ||||||||||
Sbjct 1200 AATTGTTGACCTGAGAGCTGAA-ATCGTTAAGGATACATTCTACCAGACGGCACTTGATG 1258
Query 967 ATGCAATTTCCCTTGGGAAAATTACAGTGGTGCAAATTCCAATTGAAGTCAGGATGGCTC 1026
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1259 ATGCAATTTCCCTTGGGAAAATTACAGTGGTGCAAATTCCAATTGATGTCAGGATGGCTC 1318
Query 1027 CTAAAGCTGAGCAGGTCGAGCTGTTTGCTTCTATTGTATCAGATAGCAGCAAAAGGCCGA 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1319 CTAAAGCTGAGCAGGTCGAGCTGTTTGCTTCTATTGTATCAGATAGCAGCAAAAGACCGA 1378
Query 1087 TATATGTTCACAGTAAAGAAGGTGTTTGGAGAACTTCTGCGATGGTTTCTAGGTGGAAGC 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TATATGTTCACAGTAAAGAAGGTGTTTGGAGAACTTCTGCGATGGTTTCTAGGTGGAAGC 1438
Query 1147 AGTACATGACACGTCCAATCACGAAAGAAATTCCAGTTTCAGAAGAGTCAAAGCTTCGGG 1206
||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1439 AGTACATGACACGACCGATCACGAAAGAAATTCCAGTTTCAGAAGAGTCAAAGCGTCGGG 1498
Query 1207 AGGTTTCTGAAACTAAGCTTGGATTAAATGCTGTAGTATCTGGTAAGGGTGTACCTGATG 1266
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1499 AGGTTTCTGAAACTAAGCTTGGATCAAATGCTGTAGTATCTGGTAAGGGTGTACCTGATG 1558
Query 1267 AGCATACTGATAAAGTCTCTGAAATCAATGAGGTTGATAGTAGATCTGCTACGAA-CCAG 1325
|||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 1559 AGCAGACTGATAAAGTCTCTGAAATCAATGAGGTTGATAGTAGATCTGCTTC-AAGCCAG 1617
Query 1326 AGCAAAGAATCTGGAAGCATTGAGGGAGATACATCTGCATCAGAATTTAATATGGTGAGC 1385
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 AGCAAGGAATCTGGAAGGTTTGAGGGAGATACATCTGCATCAGAATTTAATATGGTGAGC 1677
Query 1386 GATCCTCTTAAATCTCAAGTTCCACCAGGCAATATTTTTTCAAGAAAAGAAATGTCTAAA 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 GATCCTCTTAAATCTCAAGTTCCACCAGGCAATATTTTTTCAAGAAAAGAAATGTCTAAA 1737
Query 1446 TTTCTGAGGAGCAAAAGTATTGCTCCTGCTGGTTATCTTAGTAATCCGTCCAAAAAATTG 1505
|| |||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1738 TTCCTGAAGAGCAAAAGTATTGCTCCTGCTGGTTATCTTACTAATCCGTCCAAAATATTG 1797
Query 1506 GGAACAGTGCCAACTCCGCAATTTTCATATTCTGGTGTGACAAACGGAAACCAGATTTTT 1565
||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||| ||
Sbjct 1798 GGAACAGTGCCAACTCCACAATTTTCATATACTGGTGTGACAAACGGAAATCAGATTGTT 1857
Query 1566 GATAAAGATTCCATAAGAGGACTTGCGGAGACAGGAAACTCCAATGGGACCGTTTTACCT 1625
||||||||||| |||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 1858 GATAAAGATTCGATAAGAAGACTTGCGGAGACAGGAAACTCCAATGGGACCCTTCTACCT 1917
Query 1626 ACAAGTTCTCAAAGTTTAGATTTTGGCAATGGGAAGTTTTCAAATGGAAATGTGCTTGCT 1685
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1918 ACAAGTTCTCAAAGTTTAGATTTTGGCAACGGGAAGTTTTCAAATGGAAATGTGCATGCG 1977
Query 1686 TCTGATAACACCAACAAAAGTATATCGGACAACAGAGGAAATGGCTTCTCTGCAGAGCCT 1745
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1978 TCTGATAACACCAACAAAAGTATATCGGACAACAGGGGAAATGGCTTCTCTGCAGCCCCT 2037
Query 1746 ATTGTTGTGCCTCCTAGTGATAACTTAAATCGCGCTGTAGGATCCCATTCGGTTCGAGAG 1805
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2038 ATTGCTGTGCCTCCTAGTGATAACTTAAGTCGCGCTGTAGGATCCCATTCGGTTCGAGAG 2097
Query 1806 --T----CTCAGAGAAACAACAGTGCTTCTTCCTCGGATTCCAGTGATGATGAAGCTGGA 1859
| |||||||||| || |||| ||| ||||||||||||||||||||||||||||||
Sbjct 2098 TCTCAGACTCAGAGAAATAATAGTGGTTCCTCCTCGGATTCCAGTGATGATGAAGCTGGA 2157
Query 1860 GCTATTGAGGGAAATATGTGTGCTTCTGCCACTGGTGTAGTAAGGGTGCAGTCGAGAAAG 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 GCTATTGAGGGAAATATGTGTGCTTCTGCCACTGGTGTAGTAAGGGTGCAGTCGAGAAAG 2217
Query 1920 AAAGCAGAGATGTTCTTAGTCCGAACTGATGGAGTGTCTTGTACAAGGGAAAAGGTGACA 1979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218 AAAGCAGAGATGTTCTTAGTCCGAACTGATGGAGTGTCTTGTACAAGGGAAAAGGTGACA 2277
Query 1980 GAATCCTCTCTAGCCTTCACACATCCAAGTACTCAACAGCAGATGCTTCTTTGGAAAACT 2039
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 GAATCCTCTCTGGCCTTCACACATCCAAGTACTCAACAGCAGATGCTTCTTTGGAAAACT 2337
Query 2040 ACCCCAAAAACTGTCTTACTGCTGAAGAAGCTCGGGCAAGAATTGATGGAGGAAGCTAAA 2099
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2338 ACCCCAAAAACTGTCTTACTGCTGAAGAAGCTCGGGCAAGAACTGATGGAGGAAGCTAAA 2397
Query 2100 GAGG 2103
||||
Sbjct 2398 GAGG 2401
Score = 1572 bits (851), Expect = 0.0
Identities = 877/890 (99%), Gaps = 0/890 (0%)
Strand=Plus/Plus
Query 2101 AGGCTGCCTCTTTCTTGTATCACCAAGAGAATATGAATGTTCTGGTTGAACCTGAGGTGC 2160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2441 AGGCTGCCTCTTTCTTGTATCACCAAGAGAATATGAATGTTCTGGTTGAACCTGAGGTGC 2500
Query 2161 ATGATGTATTTGCCAGGATTCCAGGGTTTGGCTTTGTCCAGACCTTTTACATTCAGGACA 2220
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2501 ATGATGTATTTGCCAGGATTCCAGGGTTTGGCTTTGTCCAGACCTTCTACATTCAGGACA 2560
Query 2221 CGAGCGATCTCCATGAAAGGGTTGATTTTGTGGCATGCTTAgggggggATGGGGTGATAT 2280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2561 CGAGCGATCTCCATGAAAGGGTTGATTTTGTGGCATGCTTAGGGGGGGATGGGGTGATAT 2620
Query 2281 TACATGCATCAAACTTGTTCAAAGGAGCTGTCCCTCCCGTTGTTTCATTTAATCTGGGGT 2340
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2621 TACATGCATCAAACTTGTTCAAAGGAGCCGTCCCTCCCGTTGTTTCATTTAATCTGGGGT 2680
Query 2341 CCCTTGGATTTCTCACTTCACATCCATTTGAGGACTTCAGGCAAGACCTCAAACGAGTCA 2400
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2681 CTCTTGGATTTCTCACTTCACATCCATTTGAGGACTTCAGGCAAGACCTCAAACGAGTCA 2740
Query 2401 TCCATGGGAATAACACGCTAGATGGGGTTTATATAACTCTTCGAATGCGTCTTCGTTGCG 2460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2741 TCCATGGGAATAACACGCTAGATGGGGTTTATATAACTCTTCGAATGCGTCTTCGTTGCG 2800
Query 2461 AAATCTATCGTAAAGGCAAAGCAATGCCTGGTAAAGTGTTTGATGTTCTGAACGAGATTG 2520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2801 AAATCTATCGTAAAGGCAAAGCAATGCCTGGTAAAGTGTTTGATGTTCTGAACGAGATTG 2860
Query 2521 TTGTTGATCGAGGATCCAACCCATACCTTTCTAAGATCGAATGTTATGAGCACGACCGTC 2580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2861 TTGTTGATCGAGGATCCAACCCATACCTTTCTAAGATCGAATGTTATGAGCACGACCGTC 2920
Query 2581 TTATCACAAAGGTACAAGGTGATGGAGTTATAGTAGCCACTCCTACAGGAAGTACTGCTT 2640
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2921 TTATCACGAAGGTACAAGGCGATGGAGTTATAGTAGCCACTCCTACAGGAAGTACTGCTT 2980
Query 2641 ATTCTACAGCAGCAGGAGGTTCCATGGTGCATCCAAACGTTCCTTGCATGCTGTTCACTC 2700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2981 ATTCTACAGCAGCAGGAGGTTCCATGGTGCATCCAAACGTTCCTTGCATGCTGTTCACTC 3040
Query 2701 CAATCTGCCCACATTCCCTGTCGTTCAGACCAGTTATACTTCCGGATTCTGCAAAACTCG 2760
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3041 CAATCTGCCCACATTCCCTGTCGTTCAGACCAGTTATACTTCCAGATTCTGCAAAACTCG 3100
Query 2761 AGTTAAAGATTCCAGATGATGCCCGAAGCAATGCATGGGTTTCGTTTGATGGAAAGAGGA 2820
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 3101 AGTTAAAGATTCCAGATGATGCTCGAAGCAATGCATGGGTTTCGTTTGATGGAAAGAGAA 3160
Query 2821 GGCAACAACTTTCAAGGGGAGATTCGGTGAGAATATATATGAGCCAACATCCACTCCCAA 2880
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3161 GACAACAACTTTCAAGGGGAGATTCGGTGAGAATATACATGAGCCAACATCCACTCCCAA 3220
Query 2881 CTGTCAACAAATCTGATCAAACTGGTGATTGGTTTAGAAGCTTAATCCGTTGCTTAAACT 2940
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3221 CTGTCAACAAATCTGATCAAACCGGTGATTGGTTTAGAAGCTTAATCCGTTGCTTAAACT 3280
Query 2941 GGAACGAACGTCTTGATCAAAAGGCTCTTTGATGATTGATTGGTTCATTT 2990
||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 3281 GGAACGAGCGTCTTGATCAAAAGGCTCTCTGATGATTGATTGGTTCATTT 3330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148744985995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5