BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921145

Length=727
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G22010.1 | Symbols:  | unknown protein; Has 12 Blast hits to...   287    1e-76


> AT1G22010.1 | Symbols:  | unknown protein; Has 12 Blast hits 
to 12 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:7749571-7750062 FORWARD LENGTH=492
Length=492

 Score =  287 bits (155),  Expect = 1e-76
 Identities = 279/337 (83%), Gaps = 15/337 (4%)
 Strand=Plus/Plus

Query  39   AAAGTATCCCTCGACCATGAAATCGACTACAATCCTAAGCCTGAAGACACGGGAAAAATC  98
            ||||||||| || | ||||||||| ||||||||||||| ||||||||| | |||  ||||
Sbjct  10   AAAGTATCCATCAAGCATGAAATCAACTACAATCCTAAACCTGAAGACGCAGGACGAATC  69

Query  99   AAAGTCTATGCAAGTATCCTAATGTCGGAAGATCCTATAAGAGATTGTCGGAC-AGTACT  157
            ||||||||||  ||||||||||||||||||||||||||||||||| |||| || | ||||
Sbjct  70   AAAGTCTATGTGAGTATCCTAATGTCGGAAGATCCTATAAGAGATCGTCG-ACCAATACT  128

Query  158  CGA-ATTCTCCTTGCCTGCCAAAGAATTTTGGGATAGCTTCACAAGGTATCA-ATGGGAA  215
              | |||||| |||||||||||||||||| ||||||||||| | || ||| | |||||||
Sbjct  129  A-ACATTCTCTTTGCCTGCCAAAGAATTTCGGGATAGCTTCCCGAGTTAT-AGATGGGAA  186

Query  216  CAACTAGA-TTGCTTAGAGGACGATGAACATCTCAATCTCTTTCAGGTTGATTCT-GCAA  273
            ||||| || |||||||||||||||||||| | || || ||| ||||||||||| | || |
Sbjct  187  CAACT-GAATTGCTTAGAGGACGATGAACGTATCGATGTCTCTCAGGTTGATT-TAGCGA  244

Query  274  GGATGGAACTCACTACACGTGTCATTGATGTCATGTTTTTCTCGGTTAGTAATTCACCA-  332
            ||| |||||||| || || |||||   |  ||||||| | || |   | ||| | | || 
Sbjct  245  GGAGGGAACTCAGTAGACTTGTCACCCACCTCATGTTATACTTGC--A-TAACT-ATCAA  300

Query  333  GATTGTGCTTTGTTATTTTATATTACCTTTAAGTTCA  369
            ||||||||| ||| | |||||||||||||||||||||
Sbjct  301  GATTGTGCTCTGTCAATTTATATTACCTTTAAGTTCA  337



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35264371194


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5