BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921153
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21710.1 | Symbols: OGG1, ATOGG1 | 8-oxoguanine-DNA glycosyl... 1731 0.0
> AT1G21710.1 | Symbols: OGG1, ATOGG1 | 8-oxoguanine-DNA glycosylase
1 | chr1:7624396-7626116 FORWARD LENGTH=1388
Length=1388
Score = 1731 bits (937), Expect = 0.0
Identities = 1078/1145 (94%), Gaps = 14/1145 (1%)
Strand=Plus/Plus
Query 1 TCCGTTAACGAGCAACGGCGATGAAGAGACCTCGAGCTACATCACCGCCGTCGATCTCTA 60
||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 24 TCCGTTAACGAGCAACGGCGATGAAGAGACCTCGACCTACATCTCAGCCGTCGATCTCTT 83
Query 61 CCACCGTGAAACCACCACTGTCTCCGCCGGTCACGCCGATTCTGAAACAGAAGCTACACA 120
||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 84 CCACCGTCAAACCACCACTGTCTCCGCCGGTCACACCGATTCTCAAACAGAAGCTACACA 143
Query 121 GAACAGGAACAACACCTAAATGGTTCTCGTTAAAACTAACCCACACGGAGCTCAC-TCTA 179
||||||| |||||||||||||||| ||||||||||||||||||||||||| || | |
Sbjct 144 GAACAGG---AACACCTAAATGGTTCCCGTTAAAACTAACCCACACGGAGCTGACGT-TG 199
Query 180 CCGTTAACTTTTCCGACGGGCCAAACATTCCGGTGGAAGCAAACTGGAGCGATTCAGTAT 239
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 200 CCGTTAACTTTTCCGACGGGTCAAACATTCCGGTGGAAGAAAACTGGAGCGATTCAGTAT 259
Query 240 AGCGGAACGATTGGGCCTCATC-TCGTCTCTCTTCGACAACGTCCAGGTGACGACACAGT 298
|||||||||||||||||||| | | ||||||||| ||||||||||||| |||||| ||||
Sbjct 260 AGCGGAACGATTGGGCCTCA-CTTAGTCTCTCTTAGACAACGTCCAGGAGACGACGCAGT 318
Query 299 TTCCTACTGCGTCCATTGCAGCACTAGCCCTAAATCAGCGGAGCTTGCGTTGCTTGATTT 358
|||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 319 TTCCTACTGCGTCCATTGTAGCACAAGCCCTAAATCCGCGGAGCTTGCGTTGCTCGATTT 378
Query 359 TCTCAATGCTGAGATCTCGTTAGCTGAGCTATGGTCTGATTTCTCGAAAAAGGATCCTCG 418
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 379 TCTCAATGCTGAGATCTCGTTAGCTGAGCTATGGTCTGATTTCTCGAAAAAAGATCCTCG 438
Query 419 TTTCGGAGAATTAGCGAAG-CATCTCCGTGGCGCTCGTGTGTTGAGGCAGGATCCGCTGG 477
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 439 TTTCGGAGAGCTAGCG-AGACATCTCCGTGGCGCTCGTGTGTTGAGGCAGGATCCGCTCG 497
Query 478 AGTGCTTGATACAGTTTTTGTGCTCATCGAACAATAACATTG-GAAGGATTACGAAGATG 536
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 498 AGTGCTTGATACAGTTTTTGTGCTCATCGAACAATAACATTGCG-AGGATTACGAAGATG 556
Query 537 GTCGATTTTGTTTCGTCTTTAGGGTTACATTTGGGTGACATTGATGGATTTGAGTTTCAT 596
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GTGGATTTTGTTTCGTCTTTAGGGTTACATTTGGGTGACATTGATGGATTTGAGTTTCAT 616
Query 597 CAGTTCCCATCATTGGATCGATTATCTAGGGTTTCTGAAGCAGAGTTTAGGAATGCTGGT 656
|||||||||||||||||||||||||||||||||||||| | ||||||||| || ||||||
Sbjct 617 CAGTTCCCATCATTGGATCGATTATCTAGGGTTTCTGAGGAAGAGTTTAGAAAGGCTGGT 676
Query 657 TTTGGTTACAGAGCCAAATACATAACAGGTACAGTGAATGCTTTGCAATCAAAGCCAGGT 716
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 677 TTTGGTTACAGAGCCAAATACATAACAGGTACAGTGAATGCTTTGCAAGCAAAGCCAGGT 736
Query 717 GGTGGCGATGAATGGCTTCTTTCTCTACGAAAATTGGATCTCCAAGAGGCAGTTTCTGCT 776
||||| ||||||||||||||||||| || ||| | || ||||||||||||||| ||||
Sbjct 737 GGTGGTAATGAATGGCTTCTTTCTCTGCGCAAAGTCGAACTCCAAGAGGCAGTTGCTGCG 796
Query 777 CTGTGTACATTACCTGGTGTTGGTCCAAAGGTAGCAGCTTGCATAGCTCTGTTTTCTCTT 836
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 797 CTGTGTACATTACCTGGTGTTGGTCCGAAGGTAGCAGCTTGCATAGCTCTGTTTTCTCTT 856
Query 837 GATCAGCATAGTGCTATTCCCGTTGACACACATGTCTGGCAGATCGCAACAAATTATCTA 896
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 857 GATCAGCATAGTGCTATTCCGGTTGACACACATGTCTGGCAGATCGCAACAAATTATCTA 916
Query 897 CTGCCAGACCTTGCTGGTGCAAAACTGACACTTAAACTCCACT-GCAGAGTGGCAGAAGC 955
||||||||||||||||||||||||||||||| ||||||||| | || |||| ||||||||
Sbjct 917 CTGCCAGACCTTGCTGGTGCAAAACTGACACCTAAACTCCA-TGGCCGAGTTGCAGAAGC 975
Query 956 ATTTGTGAGTAAATATGGTGAATATGCTGGTTGGGCTCAAACATTGCTTTTCATTGCCGA 1015
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 CTTTGTGAGTAAATATGGTGAATATGCTGGTTGGGCTCAAACATTGCTTTTCATTGCCGA 1035
Query 1016 GTTACCTGCACAAAAAACTCTCTTGCAATCGTTTTCCCAGCCCATTAGCAAACTGGATAA 1075
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1036 GTTACCTGCACAAAAAACTCTCTTGCAATCGTTTTCCCAGCCCATTAACAAACTGGATGA 1095
Query 1076 TTCTACGGAAGATAATGAAACTAGCTGTGACACGATGAAGCCATGACTATGCTGTCTACC 1135
||| | |||| |||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct 1096 GTCTGCAGAAGTTAATGAAACTAGCTGTGATACGTTGAAGCCATGACTATG-TGTCTACC 1154
Query 1136 TAAGC 1140
|||||
Sbjct 1155 TAAGC 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55973607675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5