BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921161
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21760.1 | Symbols: ATFBP7, FBP7 | F-box protein 7 | chr1:76... 1786 0.0
> AT1G21760.1 | Symbols: ATFBP7, FBP7 | F-box protein 7 | chr1:7649194-7651816
FORWARD LENGTH=1320
Length=1320
Score = 1786 bits (967), Expect = 0.0
Identities = 1041/1077 (97%), Gaps = 3/1077 (0%)
Strand=Plus/Plus
Query 1 CCCGGTAACAGGGAGCTCGCACGGGCGGCTACGAAATCGCTGGATTTTCAAATCGTCTAT 60
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 63 CCCGGTAACAGGGAGCTCGCACGGGCGGCTACGAAATCGCTGTATTTTCAAATCGTCTCT 122
Query 61 CAGTTTCCATGACTTCAGATGCTCTCACTATACCGTCTGAGCTTGAATCTGCATTGCGGC 120
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 123 CAGTTTCCATGACTTCAGATGCTCTCACTATACCATCTGAGCTTGAATCTGCCTTGCGGC 182
Query 121 TCAGAACTGTACAATACTTTATTACAAAAAGGCCTTGGCTTGATCTTTATGGAGTCCATG 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TCAGGACTGTACAATACTTTATTACAAAAAGGCCTTGGCTTGATCTTTATGGAGTCCATG 242
Query 181 TGAGGCCTGTGCCACCATTCGGAAGTACAAGCCGTAAACCCCATTATGATCCAGCTTTGA 240
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 243 TGAGGCCTGTGCCACCATTCGGAAGTACAAGCCGTAAACCTCATTTTGATCCAGCTTTGA 302
Query 241 TTCATCGTTGCTTGCCTGATGAGCTTCTTTTCGAGGTGTTTGCTCGGATGATGCCTTATG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TTCATCGTTGCTTGCCTGATGAGCTTCTTTTCGAGGTGTTTGCTCGGATGATGCCTTATG 362
Query 301 ACTTAGGTAGAGCAGCTTGTGTATGCAGAAAGTGGAGGTACACGGTTCGGAACCCTGTGT 360
|||||||||||||| ||||||| || ||||||||||||||||| ||||| |||||| |||
Sbjct 363 ACTTAGGTAGAGCATCTTGTGTTTGTAGAAAGTGGAGGTACACAGTTCGAAACCCTATGT 422
Query 361 TCTGGCGTAATGCCTGCTTGAAAGCTTGGCAGACTGCTGGGGTTATCGAAAACTATAAGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TCTGGCGTAATGCCTGCTTGAAAGCTTGGCAGACTGCTGGGGTTATCGAAAACTATAAGA 482
Query 421 TCTTGCAGTCTAAATATGATGGATCATGGAGGAAAATGTGGCTTCTTAGATCCAGAGTTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TCTTGCAGTCTAAATATGATGGATCATGGAGGAAAATGTGGCTTCTTAGATCCAGAGTTC 542
Query 481 GTACTGATGGTCTATATGTGAGTAGGAATACTTACATTCGAGCTGGAATTACTGAGTGGA 540
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 543 GTACTGATGGTCTTTATGTGAGTAGGAATACTTACATTCGAGCTGGAATTGCTGAGTGGA 602
Query 541 AGATTACAAATCCAGTTCACATTGTTTGTTACTTCCGCTACATAAGGTTCTACCCTTCTG 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 603 AGATTACAAATCCAGTTCACATTGTTTGTTACTACCGCTACATAAGGTTCTACCCTTCTG 662
Query 601 GCAGATTTCTTTACAAGAACTCTTCACAGAAATTGAAGGATGTTGCCAAGTACATGAACT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GCAGATTTCTTTACAAGAACTCTTCACAGAAATTGAAGGATGTTGCCAAGTACATGAACT 722
Query 661 TTAAGGCTTCTAAATCTGACAGTCTTTACAGAGGCACTTATACATTGTCAATGTCGGATG 720
||||||||||||||||||| | |||||||| ||||||||||||| |||||||||||||||
Sbjct 723 TTAAGGCTTCTAAATCTGAAAATCTTTACAAAGGCACTTATACACTGTCAATGTCGGATG 782
Query 721 ATAAGATTGAAGCAGCTGTTCTGTACCCAGGGACGCGCCCTACTGTCTTAAGGATCCGTT 780
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 783 ATAAGATCGAAGCAGCTGTTCTGTACCCAGGGACACGCCCTACTGTCTTAAGGATTCGTT 842
Query 781 TAAGGTTAAGAGGAACAGCGGTTGGAGCGAATAACCGGATGGATTTGCTTTCACTAGTGA 840
||||||||||||||||||| |||||||||||||| ||||||||||||| ||||| ||||
Sbjct 843 TAAGGTTAAGAGGAACAGCTATTGGAGCGAATAACAGGATGGATTTGCTGTCACTTGTGA 902
Query 841 CAAGTGGTGTGAACGATGAGGAAATAAGCAGCACAGAAGAAGACATTCTTGGGGTAGTTG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 903 CAAGTGGTGTGAACGATGAGGAAATAAGCAGCACAGAAGAAGACATTCTTGGGTTAGTTG 962
Query 901 AAGGTTGGGAAGACGATGAAACTCACAACCCGGATATACCTGCCGTCTCACACAAGAGGG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAGGTTGGGAAGACGATGAAACTCACAACCCGGATATACCTGCCGTCTCACACAAGAGGG 1022
Query 961 GTATGACTCCATTCGTCTTCGTTCCTTTCGAAGAGGTTGAAC-AATCGGTTCTGAACTTG 1019
|||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1023 GTATGACTGCATTCGTCTTCGTTCCTTTCGAAGAGGTTGA-CGAATCGGTTCTGAACTTG 1081
Query 1020 CCACCGGAGAAAATGGATTACTATGTCACTGGCTAAAAGAGACACAGCGACGTATCT 1076
||||||||||||||||||||||||||||||||||||| |||||||| ||| || |||
Sbjct 1082 CCACCGGAGAAAATGGATTACTATGTCACTGGCTAAA-GAGACACATCGAAGTTTCT 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52710572250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5